[Home] | [Total List]

[178818_at]

Description T08G3.4 /REP_DB=WormBase Gene ID /WP=CE18936 /TR=Q9XU53 /GB=CAB05791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.4
(-3)
A 		5.1
(-2.1)
A 		6.2
(-1.5)
A 		14.9
(3)
A 		12
B 4
(-0.6)
A 		5.3
(1.2)
A 		6.6
(3)
A 		2.3
(-3)
A 		4
C 20.7
(3)
A 		5.6
(-3)
A 		18.6
(2.2)
A 		12.7
(-0.2)
A 		15
avr 9.4
(1.7) 		5.3
(-3) 		10.5
(3) 		10
(2.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 8.4
(-2.6)
A 		5.4
(-3)
A 		10.1
(-2.4)
A 		5.8
(-2.9)
A 		49.3
(2.9)
A 		50.4
(3)
A 		45
B 11.9
(-1.9)
A 		4.1
(-2.9)
A 		3.2
(-3)
A 		8.9
(-2.2)
A 		33.9
(1.1)
A 		48.6
(3)
A 		45
C 4.3
(-2.9)
A 		6.6
(-2.7)
A 		4.6
(-2.9)
A 		3.2
(-3)
A 		46.2
(0.7)
A 		72.4
(3)
A 		69
avr 8.2
(-2.7) 		5.4
(-3) 		6
(-2.9) 		6
(-2.9) 		43.1
(1.4) 		57.1
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-2.5)
A 		1.1
(-3)
A 		1.6
(-0.3)
A 		2.2
(3)
A 		1
B 1.3
(1.8)
A 		1.3
(1.8)
A 		1.5
(3)
A 		0.5
(-3)
A 		1
C 6.9
(3)
A 		1.6
(-3)
A 		6.5
(2.5)
A 		2.1
(-2.4)
A 		5
avr 3.1
(2.7) 		1.3
(-3) 		3.2
(3) 		1.6
(-2.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.5
(-3)
A 		1.9
(-2.8)
A 		2.2
(-2.7)
A 		1.5
(-3)
A 		14.9
(3)
A 		12.3
(1.8)
A 		13
B 4.1
(-1.9)
A 		1.4
(-2.8)
A 		0.8
(-3)
A 		2.4
(-2.4)
A 		13.8
(1.5)
A 		18.1
(3)
A 		17
C 1.6
(-2.8)
A 		2
(-2.7)
A 		1.2
(-2.9)
A 		0.7
(-3)
A 		14.9
(0.6)
A 		24.2
(3)
A 		24
avr 2.4
(-2.6) 		1.8
(-2.9) 		1.4
(-3) 		1.5
(-3) 		14.5
(1.7) 		18.2
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12855
Sequence Type Exemplar sequence
Representative Public ID T08G3.4 NCBI
Target Description T08G3.4 /REP_DB=WormBase Gene ID /WP=CE18936 /TR=Q9XU53 /GB=CAB05791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074757 NCBI Caenorhabditis elegans T08G3.4 (T08G3.4) mRNA, complete cds. 11/11 None
SNAP00000031128 ENSEMBL cdna:SNAP chromosome:CEL140:V:16442250:16444646:-1 11/11 None
GENEFINDER00000031143 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16442250:16445598:-1 11/11 None
T08G3.4 ENSEMBL cdna:known chromosome:CEL140:V:16442193:16445033:-1 gene:T08G3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16442249-16444980(-) 99.87 99.87
Public Domain and Genome References
Gene Title
Ensembl T08G3.4
Entrez Gene 188295 Entrez gene
SwissProt Q9XU53 EMBL-EBI
WormBase CE18936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05791 Hypothetical protein T08G3.4 [Caenorhabditis elegans] ref|NP_507158.1| T08G3.4 [Caenorhabditis elegans] 0.0
blast CAB16539 Hypothetical protein Y70C5C.5 [Caenorhabditis elegans] ref|NP_507230.2| Y70C5C.5 [Caenorhabditis elegans] 1.0E-174
blast CAB16539 Hypothetical protein Y70C5C.5 [Caenorhabditis elegans] ref|NP_507230.2| Y70C5C.5 [Caenorhabditis elegans] 1.0E-173
blast CAB16539 Hypothetical protein Y70C5C.5 [Caenorhabditis elegans] ref|NP_507230.2| Y70C5C.5 [Caenorhabditis elegans] 1.0E-172
blast AAT48616 Hypothetical protein F47F6.5 [Caenorhabditis elegans] ref|NP_493933.2| F47F6.5 [Caenorhabditis elegans] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:178818_AT
acagtttcactttccacgcaaaggaacggtatgctacaatggctgcaatgcgagctcctg
gtatttgtgcaatgcactcattcagttggtcgtacgcgggctgtgatgaaaagccagcat
gggctaacgtaatgttggtatacaaccggacgggtcaaacacagttctgtcactacttga
actttgaccaaccacttgcatacactaacgcaatagatcgttgcagcagtattggtgcgg
cattgtctggattcgattcgcaagctgaattggatgcagtgagagctttaatgaacgaac
ccaaaaatgcagcagataatcattacttcaccggaggaagagcaccatgtgagactgatt
gcgacgctggactagggaaaactcggacagcaagttgggaaaatggtgttgcttcaaaca
ctgattatatgactgattttcaatcctatacatcgctacccaatcaatacgtttccataa
gatcaaattctcgtccgctacatattcacccgctgacaggtggcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTTTCACTTTCCACGCAAAGGA 604 105 986 Antisense
AATGCACTCATTCAGTTGGTCGTAC 600 163 1056 Antisense
TTGGTCGTACGCGGGCTGTGATGAA 431 707 1071 Antisense
ACCGGACGGGTCAAACACAGTTCTG 303 87 1130 Antisense
GAACTTTGACCAACCACTTGCATAC 178 351 1164 Antisense
TGGTGCGGCATTGTCTGGATTCGAT 299 553 1218 Antisense
ATGTGAGACTGATTGCGACGCTGGA 215 49 1332 Antisense
ATTTTCAATCCTATACATCGCTACC 60 15 1421 Antisense
ATCGCTACCCAATCAATACGTTTCC 117 19 1437 Antisense
TAAGATCAAATTCTCGTCCGCTACA 533 637 1463 Antisense
TATTCACCCGCTGACAGGTGGCAAT 539 659 1488 Antisense
Sequence Source Affymetrix Proprietary Database