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[178817_at]

Description C47E8.6 /REP_DB=WormBase Gene ID /WP=CE05442 /TR=Q18689 /GB=CAA99794.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 33.9
(3)
A 		19.5
(0.4)
A 		1.2
(-3)
A 		5.1
(-2.3)
A 		33
B 50.1
(3)
A 		2.5
(-3)
A 		3.9
(-2.8)
A 		37
(1.3)
A 		48
C 32.5
(2.3)
A 		7.1
(-2.2)
A 		2.3
(-3)
A 		36.6
(3)
A 		34
avr 38.8
(3) 		9.7
(-1.8) 		2.5
(-3) 		26.2
(0.9) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 23.1
(1.4)
A 		8.5
(-1.5)
A 		31.3
(3)
A 		0.9
(-3)
A 		26.7
(2.1)
A 		5.5
(-2.1)
A 		30
B 40.2
(3)
A 		7.2
(-3)
A 		36.5
(2.3)
A 		12.1
(-2.1)
A 		14.2
(-1.7)
A 		20.3
(-0.6)
A 		33
C 7.5
(-2.5)
A 		18.6
(-0.7)
A 		23.5
(0.1)
A 		41.3
(3)
A 		4.5
(-3)
A 		17.3
(-0.9)
A 		37
avr 23.6
(0.9) 		11.4
(-3) 		30.4
(3) 		18.1
(-0.9) 		15.1
(-1.8) 		14.4
(-2.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.4
(3)
A 		4.2
(-1.1)
A 		0.3
(-3)
A 		0.7
(-2.8)
A 		12
B 16
(3)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		7.9
(-0.2)
A 		15
C 10.7
(3)
A 		2
(-2.3)
A 		0.8
(-3)
A 		6.2
(0.3)
A 		10
avr 13
(3) 		2.3
(-2.2) 		0.7
(-3) 		4.9
(-1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.3
(0.2)
A 		3
(-0.8)
A 		6.8
(2.1)
A 		0.2
(-3)
A 		8
(3)
A 		1.3
(-2.2)
A 		8
B 14
(3)
A 		2.4
(-3)
A 		8.9
(0.4)
A 		3.2
(-2.6)
A 		5.8
(-1.2)
A 		7.6
(-0.3)
A 		12
C 2.8
(-1.8)
A 		5.7
(0.7)
A 		6
(1)
A 		8.3
(3)
A 		1.4
(-3)
A 		5.8
(0.8)
A 		7
avr 7
(2.7) 		3.7
(-3) 		7.2
(3) 		3.9
(-2.7) 		5.1
(-0.6) 		4.9
(-0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14617
Sequence Type Exemplar sequence
Representative Public ID C47E8.6 NCBI
Target Description C47E8.6 /REP_DB=WormBase Gene ID /WP=CE05442 /TR=Q18689 /GB=CAA99794.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074226 NCBI Caenorhabditis elegans C47E8.6 (C47E8.6) mRNA, complete cds. 11/11 None
SNAP00000005837 ENSEMBL cdna:SNAP chromosome:CEL140:V:14692118:14694450:1 11/11 None
GENEFINDER00000005844 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14691743:14694450:1 11/11 None
C47E8.6 ENSEMBL cdna:known chromosome:CEL140:V:14691743:14693813:1 gene:C47E8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14691742-14693813(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47E8.6
Entrez Gene 183553 Entrez gene
SwissProt Q18689 EMBL-EBI
WormBase CE35839 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99794 Hypothetical protein C47E8.6 [Caenorhabditis elegans] ref|NP_506627.2| C47E8.6 [Caenorhabditis elegans] 0.0
blast CAE60850 Hypothetical protein CBG04559 [Caenorhabditis briggsae] 1.0E-178
blast CAA99794 Hypothetical protein C47E8.6 [Caenorhabditis elegans] ref|NP_506627.2| C47E8.6 [Caenorhabditis elegans] 1.0E-177
blast CAE60850 Hypothetical protein CBG04559 [Caenorhabditis briggsae] 1.0E-171
blast CAA99794 Hypothetical protein C47E8.6 [Caenorhabditis elegans] ref|NP_506627.2| C47E8.6 [Caenorhabditis elegans] 1.0E-165
blast CAE60850 Hypothetical protein CBG04559 [Caenorhabditis briggsae] 1.0E-144
blast CAA98620 USO1 [Saccharomyces cerevisiae] 4.0E-9
blast CAA98620 USO1 [Saccharomyces cerevisiae] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:178817_AT
ggaacacagtcagaagcaattgctccaagtggtggtctagaaagtgttgaatgtcagaca
atggaagaattgacaaaagagaaagcagcgaatatcttaagacaatctgatgatcttcta
gtaacattcattgcggagcttgaaaaagagaagttagaagctcaaagtgatttgaaatat
gcaattgtgcatttggagcaacgaatgaaagaggaacaggagacacaaatgcaagcgatg
aaagaagaaagagaaattgaaattgaggaaattggattgaaacatatggaacagataagg
acaattgaatctggaaatagtgagcaaactgccatgatgcaaggaaaaattgatttcttg
cagagcgaagtttcaaatctccgtgatctacgtgattcaatatcagcggatctcattgat
agtcgcgagaaactcaaggatcaagccgtcctactcggccaaaatcaagcaaacattgat
gagatgagcaaagaaatcgcgaggcttcaggattaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACACAGTCAGAAGCAATTGCTC 601 527 559 Antisense
GCAATTGCTCCAAGTGGTGGTCTAG 258 323 574 Antisense
GACAATCTGATGATCTTCTAGTAAC 199 365 659 Antisense
CTAGTAACATTCATTGCGGAGCTTG 10 225 676 Antisense
TGAGCAAACTGCCATGATGCAAGGA 343 563 879 Antisense
AGCGAAGTTTCAAATCTCCGTGATC 51 79 922 Antisense
ATCTCCGTGATCTACGTGATTCAAT 648 33 935 Antisense
AGCGGATCTCATTGATAGTCGCGAG 276 81 963 Antisense
ACTCAAGGATCAAGCCGTCCTACTC 9 101 990 Antisense
CGTCCTACTCGGCCAAAATCAAGCA 263 245 1005 Antisense
GAAATCGCGAGGCTTCAGGATTACA 642 361 1051 Antisense
Sequence Source Affymetrix Proprietary Database