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[178816_at]

Description B0334.7 /REP_DB=WormBase Gene ID /WP=CE19659 /TR=Q17479 /GB=CAA91378.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      4grp_highest_8_8 > 55      4grp_high_8_8 > 20      6grp_total > 15      4grp_total > 20      6grp_cgc > 42      6grp_high1_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 115
(-1.3)
P 		101.2
(-2.3)
P 		91.5
(-3)
P 		173.1
(3)
P 		82
B 114.2
(3)
P 		97.4
(-0.2)
P 		82.6
(-3)
P 		90.8
(-1.4)
P 		32
C 76.4
(0.2)
P 		94.5
(2.5)
P 		51.4
(-3)
P 		98.5
(3)
P 		47
avr 101.9
(0.5) 		97.7
(-0) 		75.2
(-3) 		120.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 104
(3)
P 		52.4
(-0.4)
P 		80
(1.4)
P 		48.6
(-0.6)
P 		104.3
(3)
P 		11.5
(-3)
A 		93
B 61.6
(-0)
P 		76.1
(1)
P 		102.8
(3)
P 		20.9
(-3)
A 		38.1
(-1.7)
A 		62.1
(0)
P 		82
C 80.9
(-0.1)
P 		126
(3)
P 		38
(-3)
A 		45
(-2.5)
A 		51.4
(-2.1)
P 		58.8
(-1.6)
P 		88
avr 82.2
(2.7) 		84.8
(3) 		73.6
(1.6) 		38.2
(-3) 		64.6
(0.4) 		44.1
(-2.2) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 41.9
(3)
P 		22
(-3)
P 		23.9
(-2.4)
P 		25.3
(-2)
P 		20
B 36.4
(3)
P 		24
(-1.3)
P 		19.1
(-3)
P 		19.4
(-2.9)
P 		17
C 25.3
(1.9)
P 		27.2
(3)
P 		17.9
(-2.3)
P 		16.6
(-3)
P 		11
avr 34.5
(3) 		24.4
(-1.3) 		20.3
(-3) 		20.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 19.2
(0.4)
P 		18.6
(0.3)
P 		17.4
(0.1)
P 		12.3
(-1)
P 		31.5
(3)
P 		2.8
(-3)
A 		29
B 21.4
(1.8)
P 		25.3
(3)
P 		25
(2.9)
P 		5.5
(-3)
A 		15.5
(0)
A 		23.2
(2.4)
P 		20
C 30
(1.3)
P 		38.4
(3)
P 		9.7
(-2.9)
A 		9
(-3)
A 		16.6
(-1.4)
P 		19.7
(-0.8)
P 		29
avr 23.5
(1.7) 		27.4
(3) 		17.4
(-0.2) 		8.9
(-3) 		21.2
(1) 		15.2
(-1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3504
Sequence Type Exemplar sequence
Representative Public ID B0334.7 NCBI
Target Description B0334.7 /REP_DB=WormBase Gene ID /WP=CE19659 /TR=Q17479 /GB=CAA91378.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064059(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064059 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-44) (srh-44) mRNA, complete cds. 10/11 None
B0334.7 ENSEMBL cdna:known chromosome:CEL140:II:11514980:11518059:1 gene:B0334.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019028 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11514976-11518056(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-44
Ensembl B0334.7
Entrez Gene 181928 Entrez gene
SwissProt Q17479 EMBL-EBI
WormBase CE35926 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91378 Hypothetical protein B0334.7 [Caenorhabditis elegans] ref|NP_496460.2| Serpentine Receptor, class H family member (srh-44) [Caenorhabditis elegans] 0.0
blast CAE59485 Hypothetical protein CBG02870 [Caenorhabditis briggsae] 1.0E-166
blast CAE58339 Hypothetical protein CBG01453 [Caenorhabditis briggsae] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496460.2 7 20-39,60-82,97-119,140-162,204-226,247-269,279-301
B0334.7 7 20-39,60-82,97-119,140-162,204-226,247-269,279-301
Sequence
Target Sequence 
>C. ELEGANS:178816_AT
ctggatccgatacacattctacgccgtcaacggaatctatgcgcttctttttttactacc
agtttacttcagaatacctgatccagaatgggcaaaactgattcttctaaaaattcttcc
gtgccctcatccgtcatattttcaatcgaatgtttttgttttttcaatggatatatcgtc
agttactgggacggctggaatatttttgctattttttctgacagaagtattcgtactttg
catccattcaagttattttctgatgagcttaaaaacacacatgtcaccaaccaccagaaa
attacaacaaaaattctttatcgatatgattttccaagtttcaatgcctgtcgttgtcat
cgttttgcccatgatctattgtttttattcaattgtttggcagcagtataatcagatgtt
caacaacattgcgataatgtgcatatctctacacggaatgtgctcaaccatcacaatgat
ctgcctgaatccaacatatcgtcattttacactttccgttttgacgtgtttctattatga
tccaactcttcgaagaagctccgtgatgaccgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGATCCGATACACATTCTACGCC 337 241 420 Antisense
GCCGTCAACGGAATCTATGCGCTTC 697 283 442 Antisense
CTATGCGCTTCTTTTTTTACTACCA 221 223 456 Antisense
TCTTCTAAAAATTCTTCCGTGCCCT 58 615 522 Antisense
CCCTCATCCGTCATATTTTCAATCG 504 259 543 Antisense
AGTATTCGTACTTTGCATCCATTCA 242 63 645 Antisense
TTTCAATGCCTGTCGTTGTCATCGT 284 671 758 Antisense
TTGTCATCGTTTTGCCCATGATCTA 96 709 773 Antisense
ATCTGCCTGAATCCAACATATCGTC 686 33 898 Antisense
ATATCGTCATTTTACACTTTCCGTT 558 19 915 Antisense
GAAGAAGCTCCGTGATGACCGTGTC 510 339 971 Antisense
Sequence Source Affymetrix Proprietary Database