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[178813_at]

Description C47B2.8 /REP_DB=WormBase Gene ID /WP=CE17569 /TR=O62103 /GB=CAB16857.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 09      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2415
1 2 3 4 range
A 580.7
(-3)
P 		724.1
(-2.6)
P 		998.9
(-1.9)
P 		2851.6
(3)
P 		2271
B 558.5
(-3)
P 		798.2
(-2.4)
P 		1073.4
(-1.7)
P 		2965.8
(3)
P 		2407
C 551.2
(-3)
P 		907.3
(-2)
P 		1015
(-1.7)
P 		2676.5
(3)
P 		2125
avr 563.5
(-3) 		809.9
(-2.3) 		1029.1
(-1.8) 		2831.3
(3) 		2268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 684
1 2 3 4 5 6 range
A 565.2
(0.8)
P 		467.9
(-0.5)
P 		511.5
(0.1)
P 		432.1
(-0.9)
P 		270.4
(-3)
P 		740.6
(3)
P 		470
B 584.6
(0.4)
P 		396.6
(-1.7)
P 		467.5
(-0.9)
P 		350.7
(-2.2)
P 		277.3
(-3)
P 		813.3
(3)
P 		536
C 584.2
(-0.4)
P 		412.4
(-1.9)
P 		456.6
(-1.5)
P 		453.6
(-1.6)
P 		295.3
(-3)
P 		954.8
(3)
P 		660
avr 578
(0.2) 		425.6
(-1.4) 		478.5
(-0.9) 		412.1
(-1.6) 		281
(-3) 		836.2
(3) 		555
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 211.4
(-1.8)
P 		157.2
(-3)
P 		261.1
(-0.6)
P 		417.4
(3)
P 		260
B 178.1
(-3)
P 		197.1
(-2.7)
P 		248.7
(-2.1)
P 		632
(3)
P 		454
C 182.5
(-3)
P 		260.8
(-1.3)
P 		353.7
(0.8)
P 		451.3
(3)
P 		269
avr 190.7
(-3) 		205
(-2.7) 		287.8
(-1.1) 		500.2
(3) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 104.2
(-1.6)
P 		166.4
(2.2)
P 		111.4
(-1.2)
P 		109.6
(-1.3)
P 		81.6
(-3)
P 		180.3
(3)
P 		99
B 203.4
(0.2)
P 		132
(-1.9)
P 		113.5
(-2.4)
P 		92.9
(-3)
P 		112.7
(-2.4)
P 		303.3
(3)
P 		210
C 216.5
(0.3)
P 		125.8
(-2.1)
P 		116.2
(-2.3)
P 		91.2
(-3)
P 		95.6
(-2.9)
P 		319.6
(3)
P 		228
avr 174.7
(-0.3) 		141.4
(-1.4) 		113.7
(-2.4) 		97.9
(-3) 		96.6
(-3) 		267.7
(3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2363
Sequence Type Exemplar sequence
Representative Public ID C47B2.8 NCBI
Target Description C47B2.8 /REP_DB=WormBase Gene ID /WP=CE17569 /TR=O62103 /GB=CAB16857.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060872 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-11) (prx-11) mRNA, complete cds. 11/11 None
SNAP00000041232 ENSEMBL cdna:SNAP chromosome:CEL140:I:12978520:12981256:1 11/11 None
GENEFINDER00000041241 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12979735:12980379:1 11/11 None
C47B2.8 ENSEMBL cdna:known chromosome:CEL140:I:12979735:12980379:1 gene:C47B2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12979665-12980310(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol prx-11
Ensembl C47B2.8
Entrez Gene 353387 Entrez gene
SwissProt O62103 EMBL-EBI
WormBase CE17569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16857 Hypothetical protein C47B2.8 [Caenorhabditis elegans] ref|NP_493273.1| PeRoXisome assembly factor family member (prx-11) [Caenorhabditis elegans] 1.0E-117
blast CAB16857 Hypothetical protein C47B2.8 [Caenorhabditis elegans] ref|NP_493273.1| PeRoXisome assembly factor family member (prx-11) [Caenorhabditis elegans] 1.0E-115
blast CAE63469 Hypothetical protein CBG07936 [Caenorhabditis briggsae] 1.0E-104
blast CAE63469 Hypothetical protein CBG07936 [Caenorhabditis briggsae] 1.0E-103
blast XP_874530 PREDICTED: similar to peroxisomal biogenesis factor 11 gamma isoform 2 [Bos taurus] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178813_AT
acacttgcccatcttaacacaaatatcgatcacctcactacagtactctcttcatatgct
ggaagagataaagcaatcagatctttagcattctatcttcaactcaaaagtaccacttca
ccagataatgccaaagaaattctgggcctagcgaaacagcttagtgccgcccgtctagta
tccagacagtttaaccatccaggaatgttaaagtcttgtagacaaattatgcaagctttt
caaactggaagaatcggagatcctttggaattcctcacaggagcagctgttacaggaatc
tacacagtctacggattcgttgagcttctcgcctggcttagtgacgctaagatccttgca
ttcaactcagcgaggctctacaaatggtgtctttacctttggttatcagaacttatcaat
ggaattgttcgacagatgagagtgatttatcggaaaggaatcgaaaaatcgcaggaggat
attttgacgcttgtcggattatcatcagactttatcagtggtgttaatagccttccacac
aagattttatgggctggaaagttgtcgatgcggcagagtgcctcgttttcattgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTTGCCCATCTTAACACAAATA 307 109 28 Antisense
AAATATCGATCACCTCACTACAGTA 104 117 48 Antisense
CACTACAGTACTCTCTTCATATGCT 617 195 63 Antisense
TTAGCATTCTATCTTCAACTCAAAA 459 681 112 Antisense
GTACCACTTCACCAGATAATGCCAA 117 457 137 Antisense
TAGCGAAACAGCTTAGTGCCGCCCG 240 651 176 Antisense
GGAGATCCTTTGGAATTCCTCACAG 229 519 283 Antisense
GTGACGCTAAGATCCTTGCATTCAA 381 483 368 Antisense
GCATTCAACTCAGCGAGGCTCTACA 556 307 385 Antisense
GGGCTGGAAAGTTGTCGATGCGGCA 632 491 578 Antisense
CAGAGTGCCTCGTTTTCATTGTTGG 126 207 601 Antisense
Sequence Source Affymetrix Proprietary Database