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[178812_at]

Description F14D7.3 /REP_DB=WormBase Gene ID /WP=CE09381 /TR=Q19455 /GB=CAB01159.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 34.1
(-1.5)
A 		6.8
(-2.9)
A 		4.6
(-3)
A 		121.6
(3)
A 		117
B 65.3
(3)
A 		15.5
(-2)
A 		6.1
(-3)
A 		30.8
(-0.5)
A 		59
C 22.1
(-2.3)
A 		18.8
(-2.4)
A 		1.8
(-3)
A 		186.4
(3)
P 		185
avr 40.5
(-1) 		13.7
(-2.5) 		4.2
(-3) 		112.9
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 3.3
(-2.7)
A 		1.5
(-3)
A 		6.2
(-2.2)
A 		8.7
(-1.7)
A 		34.7
(3)
A 		5.1
(-2.3)
A 		33
B 27.5
(1.5)
A 		5.7
(-2.7)
A 		3.9
(-3)
A 		4.2
(-2.9)
A 		35.2
(3)
A 		4.3
(-2.9)
A 		31
C 3
(-2.9)
A 		65.7
(3)
A 		2.7
(-2.9)
A 		2
(-3)
A 		14.8
(-1.8)
A 		2
(-3)
A 		64
avr 11.3
(-1.2) 		24.3
(2) 		4.3
(-2.9) 		5
(-2.7) 		28.2
(3) 		3.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 12.4
(1)
A 		1.5
(-2.9)
A 		1.2
(-3)
A 		17.8
(3)
A 		17
B 20.8
(3)
A 		3.8
(-2.3)
A 		1.4
(-3)
A 		6.6
(-1.4)
A 		19
C 7.3
(-1.7)
A 		5.4
(-2.1)
A 		0.6
(-3)
A 		31.4
(3)
P 		31
avr 13.5
(1.3) 		3.6
(-2.1) 		1.1
(-3) 		18.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		1.4
(-2.5)
A 		2.2
(-2)
A 		10.5
(3)
A 		1.2
(-2.6)
A 		10
B 9.6
(0.9)
A 		1.9
(-2.6)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		14.3
(3)
A 		1.6
(-2.7)
A 		13
C 1.1
(-2.8)
A 		20
(3)
A 		0.7
(-2.9)
A 		0.4
(-3)
A 		4.8
(-1.7)
A 		0.7
(-2.9)
A 		20
avr 3.8
(-1.1) 		7.5
(1.4) 		1
(-3) 		1.2
(-2.9) 		9.9
(3) 		1.2
(-2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14564
Sequence Type Exemplar sequence
Representative Public ID F14D7.3 NCBI
Target Description F14D7.3 /REP_DB=WormBase Gene ID /WP=CE09381 /TR=Q19455 /GB=CAB01159.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074140 NCBI Caenorhabditis elegans F14D7.3 (F14D7.3) mRNA, complete cds. 11/11 None
F14D7.3 ENSEMBL cdna:known chromosome:CEL140:V:14299387:14299812:1 gene:F14D7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14299386-14299812(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14D7.3
Entrez Gene 184463 Entrez gene
SwissProt Q19455 EMBL-EBI
WormBase CE09381 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01159 Hypothetical protein F14D7.3 [Caenorhabditis elegans] ref|NP_506541.1| F14D7.3 [Caenorhabditis elegans] 7.0E-62
blast CAE56641 Hypothetical protein CBG24402 [Caenorhabditis briggsae] 3.0E-10
blast CAB05687 Hypothetical protein C31A11.5 [Caenorhabditis elegans] ref|NP_507118.1| C31A11.5 [Caenorhabditis elegans] 8.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178812_AT
gccagggaaggatcatcacgatttgaacaatgtcgaacaaaacgctgttgaaaaatgcaa
tagtgaggtacactatgaaacaagttattgttacatgacgctgcttccaggaaaaattag
ttgttttctcatttaccagatatcatatgggcacaacttttacgaagctactgcttgcat
gccatcttcatgcaatgaagaggaatttctaaacttatacaatctaatttcaaatcaaaa
tttcaccgcgtgcagtgcaatttgctctaaagcagctttaaaaactcacaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGGGAAGGATCATCACGATTTG 153 279 15 Antisense
GTTATTGTTACATGACGCTGCTTCC 98 449 98 Antisense
GTTACATGACGCTGCTTCCAGGAAA 498 439 104 Antisense
GTTGTTTTCTCATTTACCAGATATC 231 437 134 Antisense
GATATCATATGGGCACAACTTTTAC 44 427 153 Antisense
GGGCACAACTTTTACGAAGCTACTG 217 493 163 Antisense
ACGAAGCTACTGCTTGCATGCCATC 266 93 176 Antisense
TACTGCTTGCATGCCATCTTCATGC 243 647 183 Antisense
AAATTTCACCGCGTGCAGTGCAATT 213 117 252 Antisense
GCAGTGCAATTTGCTCTAAAGCAGC 41 313 266 Antisense
AAGCAGCTTTAAAAACTCACAATCT 488 151 284 Antisense
Sequence Source Affymetrix Proprietary Database