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[178811_s_at]

Description R10E8.1 /REP_DB=WormBase Gene ID /WP=CE18910 /TR=O17998 /GB=CAB04643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 95.8
(-2.1)
P 		67.4
(-3)
P 		145.7
(-0.6)
P 		262.4
(3)
P 		195
B 135.8
(-1.9)
P 		108.4
(-2.8)
P 		101.8
(-3)
P 		293
(3)
P 		191
C 115
(-2)
P 		156.8
(-1.1)
P 		74.1
(-3)
P 		331
(3)
P 		257
avr 115.5
(-2.7) 		110.9
(-2.9) 		107.2
(-3) 		295.5
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 109.3
(-3)
P 		159.5
(-0.9)
P 		127
(-2.2)
P 		130.3
(-2.1)
P 		156.1
(-1)
P 		250.6
(3)
P 		141
B 100.5
(-3)
P 		121
(-1.8)
P 		131.5
(-1.2)
P 		122.4
(-1.7)
P 		138.3
(-0.8)
P 		205.5
(3)
P 		105
C 94
(-3)
P 		188.1
(1.5)
P 		168.2
(0.5)
P 		138.8
(-0.9)
P 		126.1
(-1.5)
P 		219.8
(3)
P 		126
avr 101.3
(-3) 		156.2
(-0.3) 		142.2
(-1) 		130.5
(-1.6) 		140.2
(-1.1) 		225.3
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 34.9
(2.1)
P 		14.6
(-3)
P 		38.1
(2.9)
P 		38.4
(3)
P 		24
B 43.3
(0)
P 		26.8
(-2.5)
P 		23.6
(-3)
P 		62.4
(3)
P 		39
C 38.1
(-0.5)
P 		45.1
(0.9)
P 		25.8
(-3)
P 		55.8
(3)
P 		30
avr 38.8
(-0.4) 		28.8
(-3) 		29.2
(-2.9) 		52.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 20.2
(-3)
P 		56.7
(2.4)
P 		27.6
(-1.9)
P 		33
(-1.1)
P 		47.1
(1)
P 		61
(3)
P 		41
B 35
(-2.6)
P 		40.3
(-1.9)
P 		31.9
(-3)
P 		32.4
(-2.9)
P 		56.2
(0.3)
P 		76.6
(3)
P 		45
C 34.9
(-2.1)
P 		57.4
(0.9)
P 		42.8
(-1)
P 		27.9
(-3)
P 		40.8
(-1.3)
P 		73.6
(3)
P 		46
avr 30
(-3) 		51.5
(0.2) 		34.1
(-2.4) 		31.1
(-2.8) 		48
(-0.3) 		70.4
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178811_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14515
Sequence Type Exemplar sequence
Representative Public ID R10E8.1 NCBI
Target Description R10E8.1 /REP_DB=WormBase Gene ID /WP=CE18910 /TR=O17998 /GB=CAB04643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075167 NCBI Caenorhabditis elegans R10E8.1 (R10E8.1) mRNA, complete cds. 11/11 None
SNAP00000042678 ENSEMBL cdna:SNAP chromosome:CEL140:V:18245190:18246295:-1 11/11 None
GENEFINDER00000042688 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18237139:18246540:-1 11/11 None
R10E8.1 ENSEMBL cdna:known chromosome:CEL140:V:18244936:18246521:-1 gene:R10E8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18245189-18246540(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E8.1
Entrez Gene 180194 Entrez gene
SwissProt O17998 EMBL-EBI
WormBase CE35603 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04644 Hypothetical protein R10E8.3 [Caenorhabditis elegans] ref|NP_507567.1| R10E8.3 [Caenorhabditis elegans] 0.0
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 1.0E-169
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 1.0E-159
blast CAB04641 Hypothetical protein R10E8.4 [Caenorhabditis elegans] ref|NP_507569.1| R10E8.4 [Caenorhabditis elegans] 2.0E-96
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 2.0E-63
blast CAB04645 Hypothetical protein R10E8.2 [Caenorhabditis elegans] ref|NP_507570.2| R10E8.2 [Caenorhabditis elegans] 4.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.0E-20
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.0E-20
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Sequence
Target Sequence 
>C. ELEGANS:178811_S_AT
gacgtcgaatcgggagctaggactcttgaagcaatcaagaatactctctcatcgaaaaag
ccttcccttaaaatcaatgagttggttttctcgttttctggtcaaccaatgtttgcccct
gccattgcaataactgagaccttggattcaggacctctaaaatcaattcacttgagcact
gacaaagaggaagaaatggattgcgatggtctcacgaagttgcctcattggaagcgaatc
aagagtctgctgattgagggatttatagtttctgcaccacttgaacattttctccatttg
ccagaggttacgattacaatgcaatctatcactatttttaatctcaagcttttgaagaag
cacttcctgggattgaaatctgagaagaagtttgtgctcaagtacaagttggacgacggt
gaaatcgctgataatgtccatgcagtgtttgaacaggcatcgagtacctgcgaaggaatc
atcaaacaatgggtttatccaaaaaatggcaacatggaaattcgtgttgagtatcgtcag
catcatggcttcaaggatcataaatttacttttatcgctctccgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCGAATCGGGAGCTAGGACTC 383 373 412 Antisense
GAATACTCTCTCATCGAAAAAGCCT 291 325 450 Antisense
AAGCCTTCCCTTAAAATCAATGAGT 465 149 469 Antisense
TGAGTTGGTTTTCTCGTTTTCTGGT 488 565 489 Antisense
TTCTGGTCAACCAATGTTTGCCCCT 674 693 507 Antisense
TTTGCCCCTGCCATTGCAATAACTG 671 665 523 Antisense
GAGACCTTGGATTCAGGACCTCTAA 582 393 547 Antisense
GATTGCGATGGTCTCACGAAGTTGC 696 433 610 Antisense
ATAGTTTCTGCACCACTTGAACATT 703 19 676 Antisense
ATTTTCTCCATTTGCCAGAGGTTAC 445 13 698 Antisense
AATTTACTTTTATCGCTCTCCGAGA 42 175 974 Antisense
Sequence Source Affymetrix Proprietary Database