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[178810_at]

Description C15A7.2 /REP_DB=WormBase Gene ID /WP=CE03022 /TR=Q18000 /GB=CAA91531.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 190.2
(3)
A 		85.6
(-1.1)
A 		37.1
(-3)
A 		101.5
(-0.5)
A 		153
B 190.4
(3)
A 		72.2
(-3)
A 		103.7
(-1.4)
A 		114.2
(-0.9)
A 		118
C 197.2
(3)
A 		104.4
(-1.2)
A 		63.1
(-3)
A 		154.2
(1.1)
A 		134
avr 192.6
(3) 		87.4
(-2.1) 		68
(-3) 		123.3
(-0.3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 162.5
(3)
A 		111.1
(0.4)
A 		117.2
(0.7)
A 		44.6
(-3)
A 		102.3
(-0.1)
A 		100.5
(-0.2)
A 		118
B 186.3
(3)
A 		130.6
(0.6)
A 		113.3
(-0.2)
A 		47.7
(-3)
A 		101.2
(-0.7)
A 		93.9
(-1)
A 		139
C 166.6
(3)
A 		128
(0.6)
A 		85.3
(-2.1)
A 		94.3
(-1.5)
A 		71.1
(-3)
A 		87.7
(-2)
A 		96
avr 171.8
(3) 		123.2
(0.3) 		105.3
(-0.6) 		62.2
(-3) 		91.5
(-1.4) 		94
(-1.3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 69.3
(3)
A 		18.6
(-2.1)
A 		9.7
(-3)
A 		14.9
(-2.5)
A 		60
B 60.7
(3)
A 		17.8
(-3)
A 		24
(-2.1)
A 		24.3
(-2.1)
A 		43
C 65.3
(3)
A 		30
(-1.9)
A 		22
(-3)
A 		26
(-2.4)
A 		43
avr 65.1
(3) 		22.1
(-2.5) 		18.6
(-3) 		21.7
(-2.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 30
(1)
A 		39.5
(3)
A 		25.5
(0)
A 		11.3
(-3)
A 		30.9
(1.2)
A 		24.5
(-0.2)
A 		28
B 64.8
(3)
A 		43.5
(0.6)
A 		27.5
(-1.3)
A 		12.6
(-3)
A 		41.1
(0.3)
A 		35
(-0.4)
A 		52
C 61.8
(3)
A 		39.1
(-0.2)
A 		21.7
(-2.6)
A 		19
(-3)
A 		23
(-2.4)
A 		29.4
(-1.5)
A 		43
avr 52.2
(3) 		40.7
(1.2) 		24.9
(-1.3) 		14.3
(-3) 		31.7
(-0.2) 		29.6
(-0.6) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16693
Sequence Type Exemplar sequence
Representative Public ID C15A7.2 NCBI
Target Description C15A7.2 /REP_DB=WormBase Gene ID /WP=CE03022 /TR=Q18000 /GB=CAA91531.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077616(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077616 NCBI Caenorhabditis elegans C15A7.2 (C15A7.2) mRNA, complete cds. 9/11 None
SNAP00000010460 ENSEMBL cdna:SNAP chromosome:CEL140:X:12070798:12073261:-1 9/11 None
GENEFINDER00000010464 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12070798:12073760:-1 9/11 None
C15A7.2 ENSEMBL cdna:known chromosome:CEL140:X:12070798:12072107:-1 gene:C15A7.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12070797-12072107(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15A7.2
Entrez Gene 182623 Entrez gene
SwissProt Q18000 EMBL-EBI
WormBase CE35399 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23668.1.S1_AT hypothetical protein LOC612449 cfa
U133_X3P:HS2.382075.1.S1_3P_AT hypothetical protein FLJ90805 hs
HG-U133_PLUS_2:1553479_AT hypothetical protein FLJ90805 hs
MG-U74CV2:138159_I_AT hypothetical protein B930076A02 mm
MG-U74CV2:138160_F_AT hypothetical protein B930076A02 mm
Protein Similarities
Method ID Description E-Value
blast CAA91531 Hypothetical protein C15A7.2 [Caenorhabditis elegans] ref|NP_510017.2| C15A7.2 [Caenorhabditis elegans] 1.0E-155
blast CAA91531 Hypothetical protein C15A7.2 [Caenorhabditis elegans] ref|NP_510017.2| C15A7.2 [Caenorhabditis elegans] 1.0E-154
blast CAE69870 Hypothetical protein CBG16204 [Caenorhabditis briggsae] 1.0E-154
blast CAE69870 Hypothetical protein CBG16204 [Caenorhabditis briggsae] 1.0E-151
blast CAA91531 Hypothetical protein C15A7.2 [Caenorhabditis elegans] ref|NP_510017.2| C15A7.2 [Caenorhabditis elegans] 1.0E-141
blast CAE69870 Hypothetical protein CBG16204 [Caenorhabditis briggsae] 1.0E-98
blast AAH86291 LOC495696 protein [Xenopus laevis] 6.0E-56
blast AAH86291 LOC495696 protein [Xenopus laevis] 3.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510017.2 6 5-27,32-54,66-85,100-122,134-156,166-188
C15A7.2 6 5-27,32-54,66-85,100-122,134-156,166-188
SNAP00000010460 7 140-162,183-205,210-232,244-263,278-300,312-334,344-366
GENEFINDER00000010464 6 207-229,250-272,277-299,311-330,345-367,379-401
Sequence
Target Sequence 
>C. ELEGANS:178810_AT
tgtgttcatttgctcgtatcttttaatgcagttttgggaaatcaagttctttgatcctgc
cgaagtgtacgctcaatcggaatccctaccagcatatctactagtaatttggcgtctcac
agcgtgggtcttctttgtcgttgcggctttgatgtcaagaagcgattcgccgcaaaaatc
tgcttttttcacaagcttcgtttttctcatgacaccatggttctgggcaccaccaatttt
cacaatgattgcgaatttctgcttgaacaattgggttcgagcggaagtggtgaacattgt
ggataacattgtgacattctacggatacatcattttcctggtaccgagaaaattaaagca
tacgttgaaatattgtgtttctttcagtatttatcgcgtccgtcagataacaatcaaaat
ttcccattccatatcagaactacacaggttgatgttgatgtcggcagaaaacaacggaaa
ccaaacgaatgatggcatgcacggagttattgagctcacggtcacaaacatgaatactcc
tgaaaaagatagtgatagtcccgcacattcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGTTCATTTGCTCGTATCTTTTA 313 555 228 Antisense
TTTGATCCTGCCGAAGTGTACGCTC 509 665 277 Antisense
AGTGTACGCTCAATCGGAATCCCTA 684 57 291 Antisense
AATCCCTACCAGCATATCTACTAGT 196 169 308 Antisense
CTTCTTTGTCGTTGCGGCTTTGATG 340 221 357 Antisense
CACAAGCTTCGTTTTTCTCATGACA 575 193 417 Antisense
TCATGACACCATGGTTCTGGGCACC 542 621 434 Antisense
TCTGGGCACCACCAATTTTCACAAT 478 607 449 Antisense
GGATACATCATTTTCCTGGTACCGA 552 509 550 Antisense
GTTTCTTTCAGTATTTATCGCGTCC 95 451 604 Antisense
GATAGTGATAGTCCCGCACATTCAG 309 425 775 Antisense
Sequence Source Affymetrix Proprietary Database