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[178808_at]

Description T23B5.3 /REP_DB=WormBase Gene ID /WP=CE28351 /TR=O45800 /GB=CAB07675.3 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 83.6
(3)
A 		10.2
(-3)
A 		10
(-3)
A 		56
(0.8)
A 		74
B 96.6
(3)
A 		17.4
(-2.2)
A 		8.4
(-2.8)
A 		5.9
(-3)
A 		91
C 50.4
(0.1)
A 		14
(-3)
A 		33
(-1.4)
A 		85.4
(3)
A 		71
avr 76.9
(3) 		13.9
(-3) 		17.1
(-2.7) 		49.1
(0.4) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.1
(-3)
A 		10.5
(-0.8)
A 		10.4
(-0.8)
A 		3
(-3)
A 		23.4
(3)
A 		5.7
(-2.2)
A 		20
B 10.2
(-1.9)
A 		18.3
(-0.2)
A 		6.4
(-2.7)
A 		5
(-3)
A 		11
(-1.7)
A 		33.7
(3)
A 		29
C 10.8
(-2.4)
A 		10.5
(-2.5)
A 		24.5
(3)
A 		10.3
(-2.6)
A 		10.5
(-2.5)
A 		9.3
(-3)
A 		15
avr 8
(-1.9) 		13.1
(1.2) 		13.8
(1.6) 		6.1
(-3) 		15
(2.3) 		16.2
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 30.4
(3)
A 		2.2
(-3)
A 		2.6
(-2.9)
A 		8.2
(-1.7)
A 		28
B 30.8
(3)
A 		4.3
(-2.4)
A 		1.9
(-2.9)
A 		1.2
(-3)
A 		30
C 16.7
(3)
A 		4
(-3)
A 		11.5
(0.5)
A 		14.4
(1.9)
A 		13
avr 26
(3) 		3.5
(-3) 		5.3
(-2.5) 		7.9
(-1.8) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.6
(-3)
A 		3.7
(-0.1)
A 		2.3
(-1.4)
A 		0.8
(-2.8)
A 		7
(3)
A 		1.4
(-2.3)
A 		6
B 3.5
(-1.8)
A 		6.1
(-0.5)
A 		1.6
(-2.8)
A 		1.3
(-3)
A 		4.5
(-1.3)
A 		12.6
(3)
A 		11
C 4
(-0.2)
A 		3.2
(-1.4)
A 		6.2
(3)
A 		2.1
(-3)
A 		3.4
(-1.1)
A 		3.1
(-1.5)
A 		4
avr 2.7
(-1.2) 		4.3
(1) 		3.4
(-0.2) 		1.4
(-3) 		5
(2) 		5.7
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9572
Sequence Type Exemplar sequence
Representative Public ID T23B5.3 NCBI
Target Description T23B5.3 /REP_DB=WormBase Gene ID /WP=CE28351 /TR=O45800 /GB=CAB07675.3 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028227, NM_001028226
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002833 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12691961:12694677:1 10/11 None
GENEFINDER00000002836 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12688641:12694677:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028226 8/11 Cross Hyb Matching Probes None
NM_001028227 8/11 Cross Hyb Matching Probes None
SNAP00000002834 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002838 1/11 Cross Hyb Matching Probes None
T23B5.3a 8/11 Cross Hyb Matching Probes A 
T23B5.3b 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12691966-12696966(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE46674 Hypothetical protein T23B5.3b [Caenorhabditis elegans] ref|NP_001023398.1| T23B5.3b [Caenorhabditis elegans] 1.0E-147
blast CAC42261 Hypothetical protein T23B5.3a [Caenorhabditis elegans] emb|CAB07675.4| Hypothetical protein T23B5.3a [Caenorhabditis elegans] ref|NP_001023397.1| T23B5.3a [Caenorhabditis elegans] 1.0E-147
blast CAE59995 Hypothetical protein CBG03488 [Caenorhabditis briggsae] 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:178808_AT
atggaacaggcggctgctgcaatggaaaaagccagaaaagaggcagaactcgcgaaacgt
gccagaatctacaaacacgtattccgcggtgccgaagaggaaggtggcaccgagcaactc
gaagagctcgagcaaaagattctcggtgttgatatcgagacgggacgacgtcttttaaag
gaagtatctgaagttgagtggcacaaaaaacaagatgaggcagagattcgcaaaaatgca
ccaccgcaatccgatagaagtgctcacaacttgtcgtcgttgagcagtggaaatcaatcg
gctcgtggaagatcttcttcgattgtaagccttgcttctatgtgcgcctttacagagctc
accgtgcaaaccggacacctcattcacaaggaattcgattggaaggagatcagtgagaac
tacgagtcgggagaagcagcaagaatcaccgaaaagctccgatcaagcagtgcaacaccc
gttggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAACAGGCGGCTGCTGCAATGG 222 53 904 Antisense
GAACTCGCGAAACGTGCCAGAATCT 470 349 949 Antisense
CTACAAACACGTATTCCGCGGTGCC 443 227 972 Antisense
GCACCACCGCAATCCGATAGAAGTG 261 313 1141 Antisense
AGAAGTGCTCACAACTTGTCGTCGT 353 75 1159 Antisense
GCAGTGGAAATCAATCGGCTCGTGG 125 311 1187 Antisense
TGTAAGCCTTGCTTCTATGTGCGCC 158 559 1227 Antisense
TATGTGCGCCTTTACAGAGCTCACC 599 655 1242 Antisense
TACAGAGCTCACCGTGCAAACCGGA 553 643 1254 Antisense
AAACCGGACACCTCATTCACAAGGA 290 69 1271 Antisense
TCAAGCAGTGCAACACCCGTTGGCA 547 629 1366 Antisense
Sequence Source Affymetrix Proprietary Database