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[178807_at]

Description F55C9.8 /REP_DB=WormBase Gene ID /WP=CE18740 /TR=Q9XUZ1 /GB=CAB04471.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 10      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 13.1
(-3)
A 		46.4
(0.3)
A 		18.2
(-2.5)
A 		72.9
(3)
A 		60
B 16.2
(-1.7)
A 		14.5
(-2.1)
A 		10.8
(-3)
A 		35.5
(3)
A 		25
C 7.4
(-2.9)
A 		4.6
(-3)
A 		12.9
(-2.6)
A 		138.8
(3)
P 		134
avr 12.2
(-3) 		21.8
(-2.2) 		14
(-2.8) 		82.4
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 9.4
(-1.6)
A 		2.2
(-3)
A 		6.4
(-2.2)
A 		6.9
(-2.1)
A 		5.9
(-2.3)
A 		32
(3)
A 		30
B 14.2
(-0.5)
A 		12.4
(-0.9)
A 		5.1
(-2.5)
A 		10.6
(-1.3)
A 		2.9
(-3)
A 		29.7
(3)
A 		27
C 39.3
(3)
A 		6.1
(-2.5)
A 		3.4
(-3)
A 		14.8
(-1.1)
A 		21.8
(0.1)
A 		37.3
(2.7)
A 		36
avr 21
(0.4) 		6.9
(-2.6) 		5
(-3) 		10.8
(-1.8) 		10.2
(-1.9) 		33
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.8
(-2.9)
A 		10.1
(2.4)
A 		4.7
(-3)
A 		10.7
(3)
A 		6
B 5.2
(0.2)
A 		3.6
(-1.7)
A 		2.5
(-3)
A 		7.6
(3)
A 		5
C 2.5
(-2.7)
A 		1.3
(-3)
A 		4.5
(-2.1)
A 		23.4
(3)
P 		22
avr 4.2
(-2.8) 		5
(-2.3) 		3.9
(-3) 		13.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.7
(-2.2)
A 		0.8
(-3)
A 		1.4
(-2.5)
A 		1.8
(-2.1)
A 		1.8
(-2.1)
A 		7.8
(3)
A 		7
B 4.9
(-0.8)
A 		4.1
(-1.2)
A 		1.2
(-3)
A 		2.8
(-2)
A 		1.2
(-3)
A 		11.1
(3)
A 		10
C 14.6
(3)
A 		1.9
(-2.6)
A 		0.9
(-3)
A 		3
(-2.1)
A 		7.1
(-0.3)
A 		12.5
(2.1)
A 		14
avr 7.1
(0.8) 		2.3
(-2.3) 		1.2
(-3) 		2.5
(-2.2) 		3.4
(-1.6) 		10.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13349
Sequence Type Exemplar sequence
Representative Public ID F55C9.8 NCBI
Target Description F55C9.8 /REP_DB=WormBase Gene ID /WP=CE18740 /TR=Q9XUZ1 /GB=CAB04471.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075356 NCBI Caenorhabditis elegans F55C9.8 (F55C9.8) mRNA, complete cds. 11/11 None
F55C9.8 ENSEMBL cdna:known chromosome:CEL140:V:19303251:19304579:-1 gene:F55C9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026277 4/11 Cross Hyb Matching Probes None
GENEFINDER00000026282 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19303250-19304579(-) 80.79 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.8
Entrez Gene 186296 Entrez gene
SwissProt Q9XUZ1 EMBL-EBI
WormBase CE18740 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04471 Hypothetical protein F55C9.8 [Caenorhabditis elegans] ref|NP_507757.1| F55C9.8 [Caenorhabditis elegans] 0.0
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 1.0E-137
blast CAE53731 Hypothetical protein C43D7.9 [Caenorhabditis elegans] ref|NP_001023705.1| C43D7.9 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.0E-8
Sequence
Target Sequence 
>C. ELEGANS:178807_AT
aagtgcacaccgacttgaattgagtcttttttctccgtctacagatttttcttgtgtaaa
ctgtgagcacttaaatatatgctataaaatgagttcacaggccttcaacttatttttaaa
gcattggatgagaggagagtacaagtctcttaaaagcctatccagttttgtggaagctga
agcgagtgcggatgagattttcaaagatgtggagtaccaggagacagagattgccaaaac
tccactgctcattaaagtcagaagagtcatctaccgattcgatggaacacgggcgacttg
tgttctgaaatatggatatccccgcctttttcttgtccactcacggagaaaaggcaaaca
ttttgaccccaaccaatatcaggccgccgacatctcacgggttccgcgcgccgctgcgtt
tagctcgctgtgggcggagacagctcgccacgcccacagcgagttaagcgcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCACACCGACTTGAATTGAGT 189 159 489 Antisense
GAATTGAGTCTTTTTTCTCCGTCTA 602 323 505 Antisense
TCTCCGTCTACAGATTTTTCTTGTG 171 611 520 Antisense
TTCACAGGCCTTCAACTTATTTTTA 484 685 582 Antisense
AAGCCTATCCAGTTTTGTGGAAGCT 201 149 642 Antisense
GGAAGCTGAAGCGAGTGCGGATGAG 323 531 660 Antisense
AGAGATTGCCAAAACTCCACTGCTC 425 69 714 Antisense
AAAACTCCACTGCTCATTAAAGTCA 77 131 724 Antisense
GAAATATGGATATCCCCGCCTTTTT 52 363 795 Antisense
CGTTTAGCTCGCTGTGGGCGGAGAC 203 245 905 Antisense
CGCCCACAGCGAGTTAAGCGCAGCG 45 257 939 Antisense
Sequence Source Affymetrix Proprietary Database