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[178806_s_at]

Description C16C2.4 /REP_DB=WormBase Gene ID /WP=CE15621 /TR=O17591 /GB=CAB02741.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 88      6grp_total > 84      4grp_total > 43      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 460
1 2 3 4 range
A 891.9
(-0.7)
P 		1174.7
(3)
P 		785.7
(-2.1)
P 		714.7
(-3)
P 		460
B 912
(-0.4)
P 		1122.9
(3)
P 		754.4
(-3)
P 		901.2
(-0.6)
P 		369
C 870.1
(-1.7)
P 		1038.1
(3)
P 		908.4
(-0.7)
P 		824.9
(-3)
P 		213
avr 891.3
(-1.4) 		1111.9
(3) 		816.2
(-2.9) 		813.6
(-3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 863
1 2 3 4 5 6 range
A 967.9
(-3)
P 		1302.3
(-0.4)
P 		1189.7
(-1.3)
P 		1751.1
(3)
P 		1649.6
(2.2)
P 		1613.4
(1.9)
P 		783
B 1012.2
(-3)
P 		1083.8
(-2.3)
P 		1109.7
(-2)
P 		1409.3
(1)
P 		1614.6
(3)
P 		1484.6
(1.7)
P 		602
C 1021
(-3)
P 		1331.8
(-0.7)
P 		1415
(-0.1)
P 		1831.3
(3)
P 		1441.8
(0.1)
P 		1740.7
(2.3)
P 		810
avr 1000.4
(-3) 		1239.3
(-0.8) 		1238.1
(-0.9) 		1663.9
(3) 		1568.7
(2.1) 		1612.9
(2.5) 		664
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 324.7
(3)
P 		255
(1.1)
P 		205.4
(-0.3)
P 		104.6
(-3)
P 		220
B 290.8
(3)
P 		277.3
(2.3)
P 		174.8
(-3)
P 		192.1
(-2.1)
P 		116
C 288
(2)
P 		298.4
(2.4)
P 		316.6
(3)
P 		139.1
(-3)
P 		178
avr 301.2
(3) 		276.9
(2.1) 		232.3
(0.3) 		145.3
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 178.4
(-3)
P 		463.2
(2.4)
P 		259.1
(-1.5)
P 		444.1
(2)
P 		497.8
(3)
P 		392.8
(1)
P 		319
B 352.2
(-1.7)
P 		360.8
(-1.6)
P 		269.5
(-3)
P 		373.3
(-1.4)
P 		656
(3)
P 		553.6
(1.4)
P 		387
C 378.4
(-2.5)
P 		406.4
(-1.8)
P 		360.1
(-3)
P 		368.3
(-2.8)
P 		466.6
(-0.1)
P 		582.7
(3)
P 		223
avr 303
(-2.8) 		410.1
(-0.2) 		296.2
(-3) 		395.2
(-0.6) 		540.1
(3) 		509.7
(2.3) 		244
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178806_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.682
Sequence Type Exemplar sequence
Representative Public ID C16C2.4 NCBI
Target Description C16C2.4 /REP_DB=WormBase Gene ID /WP=CE15621 /TR=O17591 /GB=CAB02741.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060182 NCBI Caenorhabditis elegans C16C2.4 (C16C2.4) mRNA, complete cds. 11/11 None
SNAP00000032647 ENSEMBL cdna:SNAP chromosome:CEL140:I:9721103:9723342:-1 11/11 None
GENEFINDER00000032654 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9721703:9723342:-1 11/11 None
C16C2.4 ENSEMBL cdna:known chromosome:CEL140:I:9720964:9723351:-1 gene:C16C2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9721033-9723273(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C2.4
Entrez Gene 172821 Entrez gene
SwissProt O17591 EMBL-EBI
WormBase CE15621 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588469_AT similar to SYAP1 protein cfa
CANINE_2:CFA.10731.1.S1_S_AT similar to SYAP1 protein cfa
CANINE_2:CFAAFFX.19552.1.S1_AT similar to SYAP1 protein cfa
DROSOPHILA_2:1637387_S_AT Synapse-associated protein 47kD dm
DROSGENOME1:154773_AT Synapse-associated protein 47kD dm
DROSOPHILA_2:1630169_A_AT Synapse-associated protein 47kD dm
CHICKEN:GGA.8787.1.S1_A_AT synapse associated protein 1, SAP47 homolog (Drosophila) gga
HU35KSUBA:HUM_ALU_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBB:HUM_ALU_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBC:HUM_ALU_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBD:HUM_ALU_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HUGENEFL:HUM_ALU_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HC-G110:HUM_ALU_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBB:RC_AA169535_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBC:RC_N51752_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBD:RC_W85888_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
U133_X3P:HS.47334.0.S1_3P_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U133_PLUS_2:225154_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U133B:225154_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U95B:48681_R_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U95B:52165_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U95E:72662_R_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U95E:87586_I_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U95E:87588_F_AT synapse associated protein 1, SAP47 homolog (Drosophila) hs
HG-U95B:56065_AT Synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBD:RC_AA452822_AT Synapse associated protein 1, SAP47 homolog (Drosophila) hs
HU35KSUBD:RC_AA476733_AT Synapse associated protein 1, SAP47 homolog (Drosophila) hs
MG-U74BV2:113606_AT synapse associated protein 1 mm
MOE430A:1416472_AT synapse associated protein 1 mm
MOUSE430A_2:1416472_AT synapse associated protein 1 mm
MOUSE430_2:1416472_AT synapse associated protein 1 mm
MOE430B:1441906_X_AT Synapse associated protein 1, mRNA (cDNA clone MGC:29225 IMAGE:5039534) mm
MOUSE430_2:1441906_X_AT Synapse associated protein 1, mRNA (cDNA clone MGC:29225 IMAGE:5039534) mm
MU19KSUBC:TC35692_AT Synapse associated protein 1, mRNA (cDNA clone MGC:29225 IMAGE:5039534) mm
MU19KSUBC:TC37550_AT Synapse associated protein 1, mRNA (cDNA clone MGC:29225 IMAGE:5039534) mm
RG-U34C:RC_AI070997_AT SYAP1 protein rn
RAE230B:1379635_AT SYAP1 protein rn
RAT230_2:1379635_AT SYAP1 protein rn
RAE230B:1392599_AT SYAP1 protein rn
RAT230_2:1392599_AT SYAP1 protein rn
RAE230A:1373235_AT SYAP1 protein rn
RAT230_2:1373235_AT SYAP1 protein rn
RG-U34C:RC_AI233460_AT SYAP1 protein rn
Protein Similarities
Method ID Description E-Value
blast CAB02741 Hypothetical protein C16C2.4 [Caenorhabditis elegans] ref|NP_492583.1| C16C2.4 [Caenorhabditis elegans] 1.0E-144
blast CAB02741 Hypothetical protein C16C2.4 [Caenorhabditis elegans] ref|NP_492583.1| C16C2.4 [Caenorhabditis elegans] 1.0E-119
blast CAE60243 Hypothetical protein CBG03816 [Caenorhabditis briggsae] 1.0E-110
blast CAE60243 Hypothetical protein CBG03816 [Caenorhabditis briggsae] 2.0E-87
blast CAG00695 unnamed protein product [Tetraodon nigroviridis] 1.0E-22
blast CAG00695 unnamed protein product [Tetraodon nigroviridis] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR005607 EMBL-EBI BSD 1.5E-17
Sequence
Target Sequence 
>C. ELEGANS:178806_S_AT
aaactttctccgtgattcagcagctaacagtgaatatacttacgaacagcaacaagctat
ggcaactcttttactcaaacatgatccaaatcttgcgaatgttagattccaacttgtacc
caaacaagtgaaagagaatcaattttggcaaaattatttctatcgtatcgggctcattcg
gcaatctatgcttgctcaaggcacgggaagaactacaccgacgcctaatccaattgttga
ggaaaagaaggtagaagagtcagatgtatctgctgaagttgctccacaatcgtcttctga
aattaaagaagaaaagaaagaaaatgagccggaagtgaaggaaaccgtatctgaagaaag
ttgcgaagacgaggatgaagaagaggaagaattgaaagaaactgtttctgaacaacctgc
agcaccaggagaactaactttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTTCTCCGTGATTCAGCAGCT 120 127 510 Antisense
GCTATGGCAACTCTTTTACTCAAAC 682 303 565 Antisense
TGTTAGATTCCAACTTGTACCCAAA 580 561 609 Antisense
TTCTATCGTATCGGGCTCATTCGGC 93 691 667 Antisense
GGGCTCATTCGGCAATCTATGCTTG 580 491 679 Antisense
ATCTATGCTTGCTCAAGGCACGGGA 482 27 693 Antisense
GCACGGGAAGAACTACACCGACGCC 6 317 710 Antisense
ACCGACGCCTAATCCAATTGTTGAG 459 85 726 Antisense
TTGCTCCACAATCGTCTTCTGAAAT 289 703 788 Antisense
TGTTTCTGAACAACCTGCAGCACCA 705 559 912 Antisense
GCAGCACCAGGAGAACTAACTTTGA 135 311 928 Antisense
Sequence Source Affymetrix Proprietary Database