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[178805_at]

Description C11E4.4 /REP_DB=WormBase Gene ID /WP=CE08104 /TR=Q93201 /GB=CAB02656.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 11.3
(-3)
A 		71.5
(1.7)
A 		42.9
(-0.5)
A 		88
(3)
P 		77
B 48.5
(3)
A 		47.3
(2.2)
A 		39.6
(-3)
A 		45.5
(1)
A 		9
C 10
(-2.9)
A 		48.8
(-0.8)
A 		7.9
(-3)
A 		117.9
(3)
A 		110
avr 23.3
(-3) 		55.9
(0.2) 		30.1
(-2.3) 		83.8
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 33.9
(-2.2)
A 		28.9
(-2.5)
A 		21.9
(-3)
A 		30.2
(-2.4)
A 		70.1
(0.3)
A 		109.1
(3)
A 		87
B 33.5
(-1.4)
A 		52
(-0.2)
A 		10.1
(-3)
A 		55
(0)
A 		52.8
(-0.1)
A 		99.6
(3)
A 		90
C 50.7
(2.1)
A 		41.9
(0.1)
A 		28
(-3)
A 		31.5
(-2.2)
A 		54.9
(3)
A 		53.7
(2.7)
A 		27
avr 39.4
(-1.3) 		40.9
(-1.1) 		20
(-3) 		38.9
(-1.3) 		59.3
(0.5) 		87.5
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.1
(-3)
A 		15.5
(3)
A 		11.2
(0.7)
A 		12.9
(1.6)
P 		11
B 15.5
(3)
A 		11.7
(-0.6)
A 		9.2
(-3)
A 		9.7
(-2.5)
A 		6
C 3.3
(-2.8)
A 		14
(0.9)
A 		2.7
(-3)
A 		19.9
(3)
A 		17
avr 7.6
(-3) 		13.7
(2.5) 		7.7
(-2.9) 		14.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6.2
(-2.6)
A 		10.3
(-1.5)
A 		4.8
(-3)
A 		7.7
(-2.2)
A 		21.1
(1.5)
A 		26.6
(3)
A 		22
B 11.7
(-1.4)
A 		17.3
(-0.4)
A 		2.5
(-3)
A 		14.6
(-0.9)
A 		21.5
(0.3)
A 		37.2
(3)
A 		35
C 18.8
(3)
A 		12.8
(0.1)
A 		7.1
(-2.6)
A 		6.3
(-3)
A 		17.8
(2.5)
A 		18
(2.6)
A 		13
avr 12.2
(-1) 		13.5
(-0.7) 		4.8
(-3) 		9.5
(-1.7) 		20.1
(1.1) 		27.3
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17230
Sequence Type Exemplar sequence
Representative Public ID C11E4.4 NCBI
Target Description C11E4.4 /REP_DB=WormBase Gene ID /WP=CE08104 /TR=Q93201 /GB=CAB02656.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077217 NCBI Caenorhabditis elegans C11E4.4 (C11E4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000031381 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9589771:9596119:1 9/11 None
C11E4.4 ENSEMBL cdna:known chromosome:CEL140:X:9593776:9595830:1 gene:C11E4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031376 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9593775-9595830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11E4.4
Entrez Gene 182515 Entrez gene
SwissProt Q93201 EMBL-EBI
WormBase CE08104 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE69788 Hypothetical protein CBG16079 [Caenorhabditis briggsae] 0.0
blast CAB02660 Hypothetical protein C11E4.3 [Caenorhabditis elegans] ref|NP_509617.1| Temporarily Assigned Gene name family member (tag-263) [Caenorhabditis elegans] 0.0
blast CAB02656 Hypothetical protein C11E4.4 [Caenorhabditis elegans] ref|NP_509618.1| C11E4.4 [Caenorhabditis elegans] 1.0E-148
blast CAB02656 Hypothetical protein C11E4.4 [Caenorhabditis elegans] ref|NP_509618.1| C11E4.4 [Caenorhabditis elegans] 1.0E-112
blast CAE69788 Hypothetical protein CBG16079 [Caenorhabditis briggsae] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 4.2E-10
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 9.2E-5
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 4.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509618.1 1 89-111
C11E4.4 1 89-111
GENEFINDER00000031381 2 3-25,385-407
Sequence
Target Sequence 
>C. ELEGANS:178805_AT
acacaacatcgattcctggctttatgtcccagattggaggtcaattcggctttttcctcg
gtttatcaattatcacacttatccaaatggttctgtacggattccacagcgcattcatgt
ttgccaaaaagcacattcaacgaaaatttccgttttgcaagattcatccatcggacgatt
atccccgttctacaatgacattcgacaattctaccaacatctatccaccagagaaaaaca
tttccaaggagcacatagcgactctgagccgtcgagtgatagcaaccaatcctccaagtc
cagtttccacagtaattgactccgttgatcttcctccacactgggggctccgaaacattg
accagtctcgtgagaatccactattcggcaacagtaacataacggaaattgaatatacca
ctcatcttacgatgctccttcatgatatggtaccagccctctcctttccctctcattata
aacgaacagatttgagtgatgtgggtcaacattcacgttcttgtacacgcatttatccgt
gcccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACAACATCGATTCCTGGCTTTAT 75 111 230 Antisense
GAGGTCAATTCGGCTTTTTCCTCGG 299 401 266 Antisense
GGTTCTGTACGGATTCCACAGCGCA 364 507 318 Antisense
TTATCCCCGTTCTACAATGACATTC 150 679 408 Antisense
CGACAATTCTACCAACATCTATCCA 246 253 432 Antisense
TAGCGACTCTGAGCCGTCGAGTGAT 649 649 485 Antisense
AGTAATTGACTCCGTTGATCTTCCT 448 51 540 Antisense
CACACTGGGGGCTCCGAAACATTGA 454 143 566 Antisense
TACCACTCATCTTACGATGCTCCTT 59 651 645 Antisense
GGGTCAACATTCACGTTCTTGTACA 323 497 732 Antisense
GTACACGCATTTATCCGTGCCCATA 372 461 752 Antisense
Sequence Source Affymetrix Proprietary Database