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[178804_at]

Description F57B1.5 /REP_DB=WormBase Gene ID /WP=CE11294 /TR=Q20925 /GB=CAB01512.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 62      6grp_total > 71      4grp_total > 13      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 403.3
(0.9)
P 		204.9
(-2.6)
P 		183
(-3)
P 		519.5
(3)
P 		337
B 354.1
(0.3)
P 		235.8
(-1.8)
P 		165.4
(-3)
P 		505.1
(3)
P 		340
C 383.7
(1.9)
P 		250
(-1.8)
P 		206.6
(-3)
P 		425.3
(3)
P 		219
avr 380.4
(0.9) 		230.2
(-2.1) 		185
(-3) 		483.3
(3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 417
1 2 3 4 5 6 range
A 429.5
(-1.3)
P 		429.2
(-1.3)
P 		725.4
(3)
P 		718.3
(2.9)
P 		628.1
(1.6)
P 		308
(-3)
P 		417
B 410
(-1.8)
P 		477.3
(-0.7)
P 		515.7
(-0.1)
P 		700.3
(3)
P 		579.9
(1)
P 		339.4
(-3)
P 		361
C 369.9
(-2.7)
P 		482.4
(-0.1)
P 		466.5
(-0.5)
P 		617.5
(3)
P 		479.3
(-0.2)
P 		356.6
(-3)
P 		261
avr 403.1
(-1.8) 		463
(-0.8) 		569.2
(1.1) 		678.7
(3) 		562.4
(1) 		334.7
(-3) 		344
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 146.8
(3)
P 		44.5
(-3)
P 		47.8
(-2.8)
P 		76.1
(-1.1)
P 		102
B 112.9
(3)
P 		58.2
(-1.4)
P 		38.3
(-3)
P 		107.6
(2.6)
P 		75
C 127
(3)
P 		71.9
(-3)
P 		72
(-3)
P 		71.7
(-3)
P 		55
avr 128.9
(3) 		58.2
(-2.6) 		52.7
(-3) 		85.1
(-0.4) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 79.2
(-2.8)
P 		152.6
(1.1)
P 		158
(1.3)
P 		182.2
(2.6)
P 		189.5
(3)
P 		75
(-3)
P 		115
B 142.7
(-2)
P 		158.9
(-1.2)
P 		125.2
(-3)
P 		185.5
(0.3)
P 		235.6
(3)
P 		126.5
(-2.9)
P 		110
C 137.1
(0)
P 		147.2
(1.7)
P 		118.7
(-3)
P 		124.2
(-2.1)
P 		155.1
(3)
P 		119.4
(-2.9)
P 		36
avr 119.7
(-2.1) 		152.9
(0.2) 		134
(-1.1) 		164
(1) 		193.4
(3) 		107
(-3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14353
Sequence Type Exemplar sequence
Representative Public ID F57B1.5 NCBI
Target Description F57B1.5 /REP_DB=WormBase Gene ID /WP=CE11294 /TR=Q20925 /GB=CAB01512.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073884 NCBI Caenorhabditis elegans F57B1.5 (F57B1.5) mRNA, complete cds. 11/11 None
GENEFINDER00000007057 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13210354:13211353:1 11/11 None
F57B1.5 ENSEMBL cdna:known chromosome:CEL140:V:13210354:13211353:1 gene:F57B1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13210353-13211353(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B1.5
Entrez Gene 186435 Entrez gene
SwissProt Q20925 EMBL-EBI
WormBase CE11294 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01512 Hypothetical protein F57B1.5 [Caenorhabditis elegans] ref|NP_506285.1| F57B1.5 [Caenorhabditis elegans] 1.0E-65
blast CAE64649 Hypothetical protein CBG09419 [Caenorhabditis briggsae] 8.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506285.1 4 13-35,50-69,81-100,104-126
F57B1.5 4 13-35,50-69,81-100,104-126
GENEFINDER00000007057 4 13-35,50-69,81-100,104-126
Sequence
Target Sequence 
>C. ELEGANS:178804_AT
gtttacccattcaatgtgctttcaatttccaaaattactatcattatactgttgatatta
tctctttacggatgggacacaaaacaacgaatttccggtagcaattttctcctggcaatt
tatgatattcttgcaattggaatagcgtcaatatccctatggtttattgttcaaaagttt
tattggattaaagtggaatctgtgtttaacataattggtatcctactctctctagcttca
atttccacaagttttatcacaactcttgatccagcgtctatacaatccctcacccacatc
ctcacactcattatctggatattttctgcattttgggcatggcgtgagacttacaacaat
gtgagtaacttgttcatatccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTACCCATTCAATGTGCTTTCAA 676 449 49 Antisense
TTCCGGTAGCAATTTTCTCCTGGCA 482 697 141 Antisense
TAGCGTCAATATCCCTATGGTTTAT 486 647 191 Antisense
ATAATTGGTATCCTACTCTCTCTAG 66 27 259 Antisense
TCTCTCTAGCTTCAATTTCCACAAG 183 613 275 Antisense
TATCACAACTCTTGATCCAGCGTCT 71 661 303 Antisense
TTGATCCAGCGTCTATACAATCCCT 335 703 314 Antisense
CCACATCCTCACACTCATTATCTGG 500 275 342 Antisense
TCTGGATATTTTCTGCATTTTGGGC 619 607 362 Antisense
TTTTGGGCATGGCGTGAGACTTACA 648 665 379 Antisense
GTGAGTAACTTGTTCATATCCGAAT 384 483 409 Antisense
Sequence Source Affymetrix Proprietary Database