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[178803_at]

Description K06B4.4 /REP_DB=WormBase Gene ID /WP=CE11788 /TR=O45663 /GB=CAB05758.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 42.7
(0.3)
A 		22
(-1.8)
A 		9.9
(-3)
A 		69.6
(3)
A 		60
B 35.6
(3)
A 		31.3
(-0.8)
A 		30.1
(-1.9)
A 		28.8
(-3)
A 		7
C 30.5
(-1.9)
A 		18.5
(-2.4)
A 		2.4
(-3)
A 		160.4
(3)
P 		158
avr 36.3
(-1.2) 		23.9
(-2.2) 		14.1
(-3) 		86.3
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 8.1
(-2.6)
A 		3.1
(-3)
A 		46.3
(0.7)
A 		5.3
(-2.8)
A 		72.5
(3)
P 		48.3
(0.9)
P 		69
B 22.3
(-3)
A 		41.9
(-0.7)
A 		26.9
(-2.5)
A 		25.9
(-2.6)
A 		61.7
(1.6)
P 		74
(3)
P 		52
C 3.7
(-3)
A 		19.9
(-1.8)
A 		8
(-2.7)
A 		60.7
(1.1)
A 		61.9
(1.2)
P 		86.7
(3)
P 		83
avr 11.4
(-3) 		21.6
(-2) 		27.1
(-1.4) 		30.6
(-1) 		65.4
(2.6) 		69.7
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 15.6
(3)
A 		4.8
(-2)
A 		2.6
(-3)
A 		10.2
(0.5)
A 		13
B 11.3
(3)
A 		7.7
(-1.2)
A 		7
(-2)
A 		6.1
(-3)
A 		5
C 10.1
(-0.9)
A 		5.3
(-2)
A 		0.8
(-3)
A 		27
(3)
P 		26
avr 12.3
(1.8) 		5.9
(-1.7) 		3.5
(-3) 		14.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		1.1
(-3)
A 		10.1
(-0.4)
A 		1.4
(-2.9)
A 		21.9
(3)
P 		11.8
(0.1)
P 		21
B 7.8
(-2.6)
A 		13.9
(-0.9)
A 		6.5
(-3)
A 		6.9
(-2.9)
A 		25.1
(2.3)
P 		27.6
(3)
P 		21
C 1.4
(-3)
A 		6.1
(-2)
A 		2
(-2.9)
A 		12.2
(-0.7)
A 		20
(1)
P 		29
(3)
P 		28
avr 3.6
(-3) 		7
(-1.9) 		6.2
(-2.2) 		6.8
(-2) 		22.3
(2.8) 		22.8
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12768
Sequence Type Exemplar sequence
Representative Public ID K06B4.4 NCBI
Target Description K06B4.4 /REP_DB=WormBase Gene ID /WP=CE11788 /TR=O45663 /GB=CAB05758.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074495 NCBI Caenorhabditis elegans K06B4.4 (K06B4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000010519 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15671796:15674368:1 11/11 None
K06B4.4 ENSEMBL cdna:known chromosome:CEL140:V:15671772:15674368:1 gene:K06B4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010504 2/11 Cross Hyb Matching Probes None
SNAP00000010505 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15671771-15674368(+) 98.77 100.0
Public Domain and Genome References
Gene Title
Ensembl K06B4.4
Entrez Gene 187052 Entrez gene
SwissProt O45663 EMBL-EBI
WormBase CE11788 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05758 Hypothetical protein K06B4.4 [Caenorhabditis elegans] ref|NP_506896.1| K06B4.4 [Caenorhabditis elegans] 1.0E-158
blast CAB05758 Hypothetical protein K06B4.4 [Caenorhabditis elegans] ref|NP_506896.1| K06B4.4 [Caenorhabditis elegans] 1.0E-152
blast CAE61038 Hypothetical protein CBG04781 [Caenorhabditis briggsae] 9.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506896.1 5 32-51,149-171,183-202,212-234,254-276
K06B4.4 5 32-51,149-171,183-202,212-234,254-276
GENEFINDER00000010519 5 20-42,141-163,173-195,202-224,244-263
Sequence
Target Sequence 
>C. ELEGANS:178803_AT
gaccgggttgctgatgatttctgtgctgattatgtgcaagatgagttttttccaatcgtc
caagaggttgctggaacatctaatcaatattcaatgaccagtgtcggctacatgtgcctg
tatctctggcagacgatgctttatctgtttgattcattctgcgcagttaccggagatcgc
aaagtcgagcgttttgacaatatcggcttcttcgtttcgttcatactttttgcgatcatc
tatggtttattgttcgtgttgatcgagccggagaacaagcgatggttcagtttctgcgga
attttaggggcaatccgtctagtcacctccaccatcttctatttctacatttatcttcgt
ttgaaagttgaggacaatcgacagtttttgtattggacaaaccgcatggctccgatttca
atgctattcatgtccgggttgttgatgatttcggtgctgattatgtgcaagatgagcttt
ttccggtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGGGTTGCTGATGATTTCTGTG 367 383 358 Antisense
ATGAGTTTTTTCCAATCGTCCAAGA 367 45 398 Antisense
ACCAGTGTCGGCTACATGTGCCTGT 27 87 454 Antisense
CATTCTGCGCAGTTACCGGAGATCG 249 217 512 Antisense
CAATATCGGCTTCTTCGTTTCGTTC 192 181 555 Antisense
ACAAGCGATGGTTCAGTTTCTGCGG 65 113 632 Antisense
TTAGGGGCAATCCGTCTAGTCACCT 471 671 661 Antisense
ATTGGACAAACCGCATGGCTCCGAT 171 3 749 Antisense
ATGGCTCCGATTTCAATGCTATTCA 585 51 763 Antisense
AATGCTATTCATGTCCGGGTTGTTG 550 165 777 Antisense
TGCAAGATGAGCTTTTTCCGGTCGT 340 575 823 Antisense
Sequence Source Affymetrix Proprietary Database