[Home] | [Total List]

[178801_at]

Description K08G2.5 /REP_DB=WormBase Gene ID /WP=CE11964 /TR=Q93867 /GB=CAB03192.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 03      6grp_cgc > 42      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 26.6
(-3)
A 		26.9
(-3)
A 		51.3
(-2.3)
A 		254
(3)
P 		227
B 54
(1)
P 		55.8
(1.1)
A 		5
(-3)
A 		78.7
(3)
P 		74
C 67.8
(-2)
P 		47.9
(-2.8)
A 		41.1
(-3)
P 		207.1
(3)
P 		166
avr 49.5
(-2.3) 		43.5
(-2.6) 		32.5
(-3) 		179.9
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 77.5
(3)
P 		20.5
(-2.8)
A 		76
(2.8)
P 		18.9
(-3)
A 		61.2
(1.3)
P 		23.9
(-2.5)
A 		59
B 29.4
(0.8)
P 		32.6
(1.3)
P 		38
(2.2)
A 		24.7
(0.1)
A 		43.4
(3)
P 		5.1
(-3)
A 		38
C 23.3
(-1.6)
A 		91.6
(3)
P 		3
(-3)
A 		37
(-0.7)
A 		3.6
(-3)
A 		5.2
(-2.9)
A 		89
avr 43.4
(2.2) 		48.2
(3) 		39
(1.5) 		26.9
(-0.5) 		36.1
(1) 		11.4
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9.7
(-2.3)
A 		5.8
(-3)
A 		13.4
(-1.5)
A 		37.2
(3)
P 		31
B 17.2
(3)
P 		13.8
(1.7)
A 		1.2
(-3)
A 		16.8
(2.9)
P 		16
C 22.4
(-0.6)
P 		13.8
(-3)
A 		14.3
(-2.9)
P 		34.9
(3)
P 		21
avr 16.4
(-1) 		11.1
(-2.6) 		9.6
(-3) 		29.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 14.3
(1.2)
P 		7.3
(-1.9)
A 		16.5
(2.1)
P 		4.8
(-3)
A 		18.5
(3)
P 		5.8
(-2.6)
A 		14
B 10.2
(0.2)
P 		10.9
(0.4)
P 		9.2
(-0.2)
A 		6.5
(-1.2)
A 		17.6
(3)
P 		1.9
(-3)
A 		16
C 8.7
(-1.3)
A 		28
(3)
P 		0.8
(-3)
A 		7.4
(-1.5)
A 		1.2
(-2.9)
A 		1.7
(-2.8)
A 		27
avr 11.1
(0.9) 		15.4
(3) 		8.8
(-0.2) 		6.2
(-1.5) 		12.4
(1.5) 		3.1
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12750
Sequence Type Exemplar sequence
Representative Public ID K08G2.5 NCBI
Target Description K08G2.5 /REP_DB=WormBase Gene ID /WP=CE11964 /TR=Q93867 /GB=CAB03192.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028868, NM_074558
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08G2.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15857596:15858732:-1 gene:K08G2.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016362 8/11 Cross Hyb Matching Probes None
K08G2.3 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15857595-15860260(-) 100.0 100.0
Public Domain and Genome References
Ensembl K08G2.11
Sequence
Target Sequence 
>C. ELEGANS:178801_AT
ggttcacggccataaattcagcaaaacgagaaaatggcaccgacttctgtatgtaacagc
gctatattttttggcagcaacgttccctgctcctgcatttgtgaatctccctgatcaaaa
agacgccaaaatgattgctcaaaataaaaattggtgtattccaactgataatttcaatca
ttccaagttctttttactagatagtactggaaccttcattgttatttgtatggtatccat
gttgagcattgttatctcccaaatgtttgtgcaaattgcgctgatcttccgtgaattgct
taaatacacgcccatctctagaaatacacagcgtctacaaaaacagtattttgttgccat
tagcttacaattggccattccaatcgttatcattgcatttccagttatttacattgttct
ttcaattgttttaggttattataatcaaggtggaaataatctggcattccttattttctc
actacatggagttctatcaactttaacaatgttaatggttcacacgccttacagaaaatc
attattcgaaatgttacacctggaatcatttcagtcagccagtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCACGGCCATAAATTCAGCAAA 246 507 876 Antisense
AATGGCACCGACTTCTGTATGTAAC 706 161 908 Antisense
TTTTTTGGCAGCAACGTTCCCTGCT 376 673 942 Antisense
TGTTGAGCATTGTTATCTCCCAAAT 426 563 1115 Antisense
TGCAAATTGCGCTGATCTTCCGTGA 167 577 1145 Antisense
TTAAATACACGCCCATCTCTAGAAA 116 685 1175 Antisense
CATTAGCTTACAATTGGCCATTCCA 86 217 1233 Antisense
GGCCATTCCAATCGTTATCATTGCA 34 545 1248 Antisense
GCATTCCTTATTTTCTCACTACATG 409 307 1339 Antisense
TGTTAATGGTTCACACGCCTTACAG 449 561 1385 Antisense
GGAATCATTTCAGTCAGCCAGTAAC 524 533 1437 Antisense
Sequence Source Affymetrix Proprietary Database