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[178799_at]

Description F14D7.7 /REP_DB=WormBase Gene ID /WP=CE09385 /TR=Q19451 /GB=CAB01155.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_high_8_8 > 41      6grp_highest_nonorm > 97      6grp_total > 85      4grp_total > 54      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 886.4
(3)
P 		386.7
(-0.8)
P 		300.9
(-1.4)
P 		90.8
(-3)
A 		796
B 864.1
(3)
P 		366
(-0.7)
P 		339.6
(-0.9)
P 		61.6
(-3)
A 		803
C 873.1
(3)
P 		389.8
(-1)
P 		308.1
(-1.7)
P 		155
(-3)
P 		718
avr 874.5
(3) 		380.8
(-0.8) 		316.2
(-1.3) 		102.5
(-3) 		772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1070
1 2 3 4 5 6 range
A 426
(-3)
P 		582.8
(-1.9)
P 		754.9
(-0.7)
P 		1288.2
(3)
P 		809.1
(-0.3)
P 		1213.4
(2.5)
P 		862
B 620
(-2.8)
P 		670.2
(-2.4)
P 		601.2
(-3)
P 		889.5
(-0.5)
P 		1176.3
(2)
P 		1286.4
(3)
P 		685
C 675.7
(-2.7)
P 		630.6
(-3)
P 		841.9
(-1.5)
P 		1252.8
(1.3)
P 		1095.9
(0.2)
P 		1496.1
(3)
P 		866
avr 573.9
(-3) 		627.9
(-2.6) 		732.7
(-1.7) 		1143.5
(1.5) 		1027.1
(0.6) 		1332
(3) 		758
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 322.7
(3)
P 		83.9
(-1.6)
P 		78.7
(-1.7)
P 		13.3
(-3)
A 		309
B 275.5
(3)
P 		90.4
(-1.2)
P 		78.7
(-1.5)
P 		13.1
(-3)
A 		262
C 289
(3)
P 		112.1
(-1)
P 		107.4
(-1.1)
P 		26.1
(-3)
P 		263
avr 295.7
(3) 		95.5
(-1.3) 		88.3
(-1.5) 		17.5
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 78.5
(-3)
P 		207.3
(0.1)
P 		164.4
(-0.9)
P 		326.7
(3)
P 		244.1
(1)
P 		295.4
(2.2)
P 		248
B 215.7
(-1.7)
P 		223.1
(-1.6)
P 		146
(-3)
P 		235.6
(-1.4)
P 		477.9
(3)
P 		479.7
(3)
P 		334
C 250.5
(-1.9)
P 		192.4
(-3)
P 		214.3
(-2.6)
P 		251.9
(-1.8)
P 		354.6
(0.2)
P 		500.8
(3)
P 		308
avr 181.6
(-2.8) 		207.6
(-2.2) 		174.9
(-3) 		271.4
(-0.7) 		358.9
(1.4) 		425.3
(3) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12738
Sequence Type Exemplar sequence
Representative Public ID F14D7.7 NCBI
Target Description F14D7.7 /REP_DB=WormBase Gene ID /WP=CE09385 /TR=Q19451 /GB=CAB01155.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028624(9), NM_074144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028624 NCBI Caenorhabditis elegans F14D7.10 (F14D7.10) mRNA, complete cds. 9/11 None
NM_074144 NCBI Caenorhabditis elegans F14D7.7 (F14D7.7) mRNA, complete cds. 11/11 None
SNAP00000017359 ENSEMBL cdna:SNAP chromosome:CEL140:V:14309092:14309448:-1 11/11 None
SNAP00000017361 ENSEMBL cdna:SNAP chromosome:CEL140:V:14311073:14311429:1 9/11 None
GENEFINDER00000017371 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14311073:14312906:1 9/11 None
GENEFINDER00000017372 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14309092:14309448:-1 11/11 None
F14D7.7 ENSEMBL cdna:known chromosome:CEL140:V:14309092:14309448:-1 gene:F14D7.7 11/11 None
F14D7.10 ENSEMBL cdna:known chromosome:CEL140:V:14311073:14311904:1 gene:F14D7.10 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017363 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14311072-14311429(+) 99.36 99.36
chrV:14309091-14309448(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F14D7.7
F14D7.10
Entrez Gene 184467 Entrez gene
3565550 Entrez gene
SwissProt Q7YX37 EMBL-EBI
Q19451 EMBL-EBI
WormBase CE34807 Wormbase
CE09385 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17787 Hypothetical protein F14D7.10 [Caenorhabditis elegans] ref|NP_001023795.1| F14D7.10 [Caenorhabditis elegans] 4.0E-97
blast CAE17787 Hypothetical protein F14D7.10 [Caenorhabditis elegans] ref|NP_001023795.1| F14D7.10 [Caenorhabditis elegans] 8.0E-59
blast CAB01155 Hypothetical protein F14D7.7 [Caenorhabditis elegans] ref|NP_506545.1| F14D7.7 [Caenorhabditis elegans] 1.0E-51
blast CAB01155 Hypothetical protein F14D7.7 [Caenorhabditis elegans] ref|NP_506545.1| F14D7.7 [Caenorhabditis elegans] 4.0E-51
blast CAE17787 Hypothetical protein F14D7.10 [Caenorhabditis elegans] ref|NP_001023795.1| F14D7.10 [Caenorhabditis elegans] 6.0E-50
Sequence
Target Sequence 
>C. ELEGANS:178799_AT
atgttccgactattcacaattacctttgctctccttgctatctcagctctttctgctcca
gtcgaatatccaactgaagaacaagcaagagccgaactcaaggcagctggaatgtctcaa
ccaagtattgatggaatattttctttgattcaaagatttgctgctggattcccaatggtt
caatcaaataaagaagcaactgataaattcattgctgaatacactgctgatgctcagaac
tttatgaattctatgccggctggggatcagacaatctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCCGACTATTCACAATTACCT 375 47 13 Antisense
TATTCACAATTACCTTTGCTCTCCT 510 663 23 Antisense
CTCTTTCTGCTCCAGTCGAATATCC 270 231 59 Antisense
GCTCCAGTCGAATATCCAACTGAAG 179 299 67 Antisense
GCAAGAGCCGAACTCAAGGCAGCTG 505 321 97 Antisense
GGCAGCTGGAATGTCTCAACCAAGT 77 533 114 Antisense
AAAGATTTGCTGCTGGATTCCCAAT 126 123 164 Antisense
GCTGGATTCCCAATGGTTCAATCAA 272 295 175 Antisense
CACTGCTGATGCTCAGAACTTTATG 125 197 234 Antisense
CTTTATGAATTCTATGCCGGCTGGG 64 221 252 Antisense
GCCGGCTGGGGATCAGACAATCTAC 562 283 267 Antisense
Sequence Source Affymetrix Proprietary Database