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[178798_s_at]

Description K02B7.3 /REP_DB=WormBase Gene ID /WP=CE16205 /TR=O45637 /GB=CAB05540.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 41      6grp_total > 04      4grp_total > 49      6grp_highest_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 602
1 2 3 4 range
A 211.7
(-3)
P 		724.6
(2.1)
P 		813.9
(3)
P 		327.1
(-1.9)
P 		602
B 254.6
(-3)
P 		767.9
(3)
P 		750.1
(2.8)
P 		462
(-0.6)
P 		513
C 259.4
(-3)
P 		697
(3)
P 		694.7
(3)
P 		319.6
(-2.2)
P 		438
avr 241.9
(-3) 		729.8
(2.7) 		752.9
(3) 		369.6
(-1.5) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 833.6
(3)
P 		818.9
(2.7)
P 		633.7
(-0.8)
P 		834.9
(3)
P 		701.2
(0.4)
P 		520.5
(-3)
P 		314
B 936
(2.1)
P 		993.9
(3)
P 		721.4
(-1.1)
P 		747.1
(-0.7)
P 		755.3
(-0.6)
P 		592.2
(-3)
P 		402
C 936.3
(3)
P 		865.4
(1.8)
P 		719.6
(-0.6)
P 		658.8
(-1.7)
P 		812.2
(0.9)
P 		579.4
(-3)
P 		357
avr 902
(3) 		892.7
(2.8) 		691.6
(-0.7) 		746.9
(0.2) 		756.2
(0.4) 		564
(-3) 		338
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 77.1
(-1.9)
P 		157.3
(1)
P 		212.8
(3)
P 		47.9
(-3)
P 		165
B 81.2
(-3)
P 		189.7
(3)
P 		173.8
(2.1)
P 		98.5
(-2)
P 		109
C 85.9
(-2)
P 		200.4
(1.7)
P 		242.1
(3)
P 		53.9
(-3)
P 		188
avr 81.4
(-2.4) 		182.5
(1.9) 		209.6
(3) 		66.8
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 153.7
(-2)
P 		291.2
(3)
P 		138
(-2.6)
P 		211.7
(0.1)
P 		211.6
(0.1)
P 		126.7
(-3)
P 		165
B 325.7
(2.8)
P 		330.8
(3)
P 		175.2
(-3)
P 		197.9
(-2.1)
P 		306.9
(2.1)
P 		220.8
(-1.2)
P 		156
C 347
(3)
P 		264.1
(0.7)
P 		183.1
(-1.6)
P 		132.5
(-3)
P 		262.8
(0.6)
P 		194
(-1.3)
P 		215
avr 275.5
(2.1) 		295.4
(3) 		165.4
(-3) 		180.7
(-2.3) 		260.4
(1.4) 		180.5
(-2.3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178798_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2694
Sequence Type Exemplar sequence
Representative Public ID K02B7.3 NCBI
Target Description K02B7.3 /REP_DB=WormBase Gene ID /WP=CE16205 /TR=O45637 /GB=CAB05540.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064650 NCBI Caenorhabditis elegans K02B7.3 (K02B7.3) mRNA, complete cds. 11/11 None
SNAP00000001044 ENSEMBL cdna:SNAP chromosome:CEL140:II:14694267:14695176:-1 11/11 None
K02B7.3.2 ENSEMBL cdna:known chromosome:CEL140:II:14694126:14695188:-1 gene:K02B7.3 11/11 None
K02B7.3.1 ENSEMBL cdna:known chromosome:CEL140:II:14694143:14695190:-1 gene:K02B7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14694263-14695173(-) 99.72 100.0
Public Domain and Genome References
Gene Title
Ensembl K02B7.3
Entrez Gene 175129 Entrez gene
SwissProt O45637 EMBL-EBI
WormBase CE16205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05540 Hypothetical protein K02B7.3 [Caenorhabditis elegans] ref|NP_497051.1| K02B7.3 [Caenorhabditis elegans] 5.0E-64
blast CAE65893 Hypothetical protein CBG11059 [Caenorhabditis briggsae] 3.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178798_S_AT
gtccagtcgtctttacacttttgatcacacttttgctcgccagttctgtgcaagccgatt
ggtgggacgggttcactgatacggtcagcggaggtctgaacaatgccgccggatggttca
aggagacggcgtctccagcaatccgtgacaagttcaacgagtacaaggagaagcttcagg
acccggaaacccacaagaacatccgagaatgggttgcagagaagtacgaggccgcatccg
aattcacaaaggaggagattgttccggagcttaagaaggtgtacgaggcggccactgctg
atgtgacgacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCAGTCGTCTTTACACTTTTGAT 13 477 17 Antisense
CACTTTTGATCACACTTTTGCTCGC 674 195 32 Antisense
TTTTGCTCGCCAGTTCTGTGCAAGC 445 677 47 Antisense
TCTGTGCAAGCCGATTGGTGGGACG 516 601 61 Antisense
GGGACGGGTTCACTGATACGGTCAG 74 395 80 Antisense
GTCTGAACAATGCCGCCGGATGGTT 51 471 110 Antisense
CGGATGGTTCAAGGAGACGGCGTCT 453 243 126 Antisense
TCTCCAGCAATCCGTGACAAGTTCA 477 609 148 Antisense
GAAACCCACAAGAACATCCGAGAAT 25 359 202 Antisense
CAGAGAAGTACGAGGCCGCATCCGA 156 205 233 Antisense
CGGCCACTGCTGATGTGACGACGAA 208 241 305 Antisense
Sequence Source Affymetrix Proprietary Database