[Home] | [Total List]

[178797_at]

Description C49F5.7 /REP_DB=WormBase Gene ID /WP=CE08858 /TR=O17685 /GB=CAB03980.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 45      6grp_total > 82      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8586
1 2 3 4 range
A 2401.1
(-3)
P 		3104.7
(-2.4)
P 		2731.6
(-2.7)
P 		9717.1
(3)
P 		7316
B 2658.6
(-2.8)
P 		2497.8
(-3)
P 		2750.4
(-2.8)
P 		8845.9
(3)
P 		6348
C 3216.2
(-1.4)
P 		1131.1
(-3)
P 		1874.6
(-2.4)
P 		9113.1
(3)
P 		7982
avr 2758.6
(-2.6) 		2244.5
(-3) 		2452.2
(-2.8) 		9225.4
(3) 		6981

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3661
1 2 3 4 5 6 range
A 696.4
(-3)
P 		3794.2
(3)
P 		2952.9
(1.4)
P 		3672.7
(2.8)
P 		2733.4
(0.9)
P 		1967.8
(-0.5)
P 		3098
B 1162.8
(-3)
P 		2656.5
(2.2)
P 		2275
(0.9)
P 		2139.7
(0.4)
P 		2880.7
(3)
P 		1795.1
(-0.8)
P 		1718
C 1965
(-2.3)
P 		2759.9
(-0.6)
P 		3064.8
(0.1)
P 		2547.3
(-1)
P 		4357.2
(3)
P 		1669.1
(-3)
P 		2688
avr 1274.7
(-3) 		3070.2
(2.3) 		2764.2
(1.4) 		2786.6
(1.4) 		3323.8
(3) 		1810.7
(-1.4) 		2049
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1560
1 2 3 4 range
A 874.2
(-1.4)
P 		673.9
(-3)
P 		714.1
(-2.7)
P 		1422.4
(3)
P 		749
B 847.8
(-1.9)
P 		616.9
(-3)
P 		637.3
(-2.9)
P 		1885.1
(3)
P 		1268
C 1064.7
(0.7)
P 		325.2
(-3)
P 		653.3
(-1.4)
P 		1536.6
(3)
P 		1211
avr 928.9
(-0.8) 		538.7
(-3) 		668.2
(-2.3) 		1614.7
(3) 		1076

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1282
1 2 3 4 5 6 range
A 128.4
(-3)
P 		1349.4
(3)
P 		643.1
(-0.5)
P 		931.5
(0.9)
P 		824.8
(0.4)
P 		479.1
(-1.3)
P 		1221
B 404.6
(-3)
P 		884.2
(0.8)
P 		552.4
(-1.8)
P 		566.7
(-1.7)
P 		1170.4
(3)
P 		669.4
(-0.9)
P 		766
C 728.3
(-1.6)
P 		842.1
(-0.8)
P 		780.1
(-1.2)
P 		512.3
(-3)
P 		1409.9
(3)
P 		558.8
(-2.7)
P 		898
avr 420.4
(-3) 		1025.2
(2.1) 		658.5
(-1) 		670.2
(-0.9) 		1135
(3) 		569.1
(-1.8) 		715
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16738
Sequence Type Exemplar sequence
Representative Public ID C49F5.7 NCBI
Target Description C49F5.7 /REP_DB=WormBase Gene ID /WP=CE08858 /TR=O17685 /GB=CAB03980.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077607(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077607 NCBI Caenorhabditis elegans C49F5.7 (C49F5.7) mRNA, complete cds. 10/11 None
SNAP00000033512 ENSEMBL cdna:SNAP chromosome:CEL140:X:11995423:11995703:1 10/11 None
C49F5.7.1 ENSEMBL cdna:known chromosome:CEL140:X:11994375:11995761:1 gene:C49F5.7 10/11 None
C49F5.7.2 ENSEMBL cdna:known chromosome:CEL140:X:11994707:11995761:1 gene:C49F5.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11995007-11995703(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49F5.7
Entrez Gene 183615 Entrez gene
SwissProt O17685 EMBL-EBI
WormBase CE31455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03980 Hypothetical protein C49F5.7 [Caenorhabditis elegans] ref|NP_510008.2| C49F5.7 [Caenorhabditis elegans] 1.0E-43
blast CAB03980 Hypothetical protein C49F5.7 [Caenorhabditis elegans] ref|NP_510008.2| C49F5.7 [Caenorhabditis elegans] 2.0E-36
blast CAE69861 Hypothetical protein CBG16191 [Caenorhabditis briggsae] 5.0E-25
blast CAE69861 Hypothetical protein CBG16191 [Caenorhabditis briggsae] 1.0E-23
blast CAA94913 Hypothetical protein F23D12.1 [Caenorhabditis elegans] ref|NP_510402.1| F23D12.1 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:178797_AT
gttcgaacccaggcaatgtaggcatttggatattttaagaacagttaaaacaaaaaaatt
gaagaaacaattaattaaagtcgaaggaaaggtacaacaactgatcgcattcctagttca
acagcctgccgatcaaatcgacaatagctttgactttaaagcacatgaccaggatcgtgc
cgaatattttgatacaatgattgcagaggccttgacttcatttttcgaagtgccaaccga
accgtcagatattgaaccgttgagcactgtccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGAACCCAGGCAATGTAGGCAT 133 443 15 Antisense
GGTACAACAACTGATCGCATTCCTA 4 505 105 Antisense
TCGCATTCCTAGTTCAACAGCCTGC 67 601 119 Antisense
TTCAACAGCCTGCCGATCAAATCGA 584 685 131 Antisense
AAATCGACAATAGCTTTGACTTTAA 139 119 149 Antisense
GACTTTAAAGCACATGACCAGGATC 665 371 166 Antisense
GACCAGGATCGTGCCGAATATTTTG 157 383 181 Antisense
GATTGCAGAGGCCTTGACTTCATTT 31 435 213 Antisense
GACTTCATTTTTCGAAGTGCCAACC 668 369 228 Antisense
AGTGCCAACCGAACCGTCAGATATT 155 61 243 Antisense
ATTGAACCGTTGAGCACTGTCCAGG 316 3 265 Antisense
Sequence Source Affymetrix Proprietary Database