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[178796_at]

Description C08E8.2 /REP_DB=WormBase Gene ID /WP=CE17376 /TR=O62040 /GB=CAB03857.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 55.6
(1.1)
P 		72.9
(3)
A 		17.2
(-3)
A 		58
(1.4)
A 		56
B 31.4
(-2.6)
A 		30
(-3)
A 		52.1
(3)
A 		36.1
(-1.3)
A 		22
C 38.1
(-3)
A 		57.1
(-0.1)
A 		46.2
(-1.8)
P 		77.9
(3)
M 		40
avr 41.7
(-2) 		53.3
(1.7) 		38.5
(-3) 		57.3
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 42.8
(3)
A 		31.8
(0.8)
A 		36.4
(1.7)
A 		23.4
(-0.9)
A 		39.1
(2.3)
A 		13
(-3)
A 		30
B 80.9
(3)
P 		43.4
(-0.9)
A 		37.7
(-1.5)
A 		31
(-2.2)
P 		23.3
(-3)
A 		34.5
(-1.8)
A 		58
C 22.5
(-1.2)
A 		54.7
(3)
A 		41.2
(1.2)
A 		43.2
(1.5)
A 		8.9
(-3)
A 		25.5
(-0.8)
A 		46
avr 48.7
(3) 		43.3
(1.7) 		38.4
(0.5) 		32.5
(-0.9) 		23.8
(-3) 		24.3
(-2.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 20.2
(3)
P 		15.8
(1.3)
A 		4.5
(-3)
A 		8.5
(-1.5)
A 		16
B 10
(0.3)
A 		7.4
(-3)
A 		12.1
(3)
A 		7.7
(-2.6)
A 		5
C 12.6
(-3)
A 		16.4
(3)
A 		16.1
(2.5)
P 		13.1
(-2.2)
M 		4
avr 14.3
(3) 		13.2
(1.5) 		10.9
(-1.5) 		9.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.9
(0.3)
A 		11.3
(2.7)
A 		7.9
(0.3)
A 		5.9
(-1.1)
A 		11.8
(3)
A 		3.2
(-3)
A 		9
B 28.1
(3)
P 		14.5
(-1.1)
A 		9.1
(-2.7)
A 		8.2
(-3)
P 		9.5
(-2.6)
A 		12.9
(-1.6)
A 		20
C 8.3
(-0.7)
A 		16.7
(3)
A 		10.5
(0.3)
A 		8.7
(-0.5)
A 		2.9
(-3)
A 		8.5
(-0.6)
A 		14
avr 14.8
(3) 		14.2
(2.5) 		9.2
(-1.7) 		7.6
(-3) 		8.1
(-2.6) 		8.2
(-2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12723
Sequence Type Exemplar sequence
Representative Public ID C08E8.2 NCBI
Target Description C08E8.2 /REP_DB=WormBase Gene ID /WP=CE17376 /TR=O62040 /GB=CAB03857.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075189 NCBI Caenorhabditis elegans C08E8.2 (C08E8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000008173 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18356084:18370987:-1 11/11 None
C08E8.2 ENSEMBL cdna:known chromosome:CEL140:V:18357603:18358416:-1 gene:C08E8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008155 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18357602-18358416(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E8.2
Entrez Gene 182407 Entrez gene
SwissProt O62040 EMBL-EBI
WormBase CE17376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05527 Hypothetical protein F57C2.5 [Caenorhabditis elegans] ref|NP_497019.1| F57C2.5 [Caenorhabditis elegans] 1.0E-120
blast CAE73427 Hypothetical protein CBG20870 [Caenorhabditis briggsae] 1.0E-113
blast CAB03857 Hypothetical protein C08E8.2 [Caenorhabditis elegans] ref|NP_507590.1| C08E8.2 [Caenorhabditis elegans] 1.0E-106
blast CAB03857 Hypothetical protein C08E8.2 [Caenorhabditis elegans] ref|NP_507590.1| C08E8.2 [Caenorhabditis elegans] 9.0E-76
blast CAB05527 Hypothetical protein F57C2.5 [Caenorhabditis elegans] ref|NP_497019.1| F57C2.5 [Caenorhabditis elegans] 1.0E-29
blast CAE73427 Hypothetical protein CBG20870 [Caenorhabditis briggsae] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR004141 EMBL-EBI Strictosidine synthase 4.9E-24
Pfam IPR004141 EMBL-EBI Strictosidine synthase 4.9E-24
Pfam IPR004141 EMBL-EBI Strictosidine synthase 1.9E-56
Pfam IPR004141 EMBL-EBI Strictosidine synthase 4.1E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008173 1 54-76
Sequence
Target Sequence 
>C. ELEGANS:178796_AT
ggatggaaaggttcgggccactgcggtgtactcgaagaatccgatttttccgccgaatat
gacaagattcgaggctgaagcgatttgtggaagaccccttggaattaggaagcttgtgga
gggaactaagaagtttgtacttgtggatgcgtatttgggagttttcattatcgatttttc
cgatgaattgagaccgtgttttttcggtcaatataagtataatcatggcacatttctgat
agtttcgcaatttcgagagagcgcagagaaacgagacactatcgtcgtctgcgccctctc
actctctctcgccggccgtaacttttttcgtttagacaaaatcaacacaaatcctggacg
cttccaagccaatcgacggattcaggcccaacttcctcaacgacctggacgtaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGAAAGGTTCGGGCCACTGCG 440 497 132 Antisense
GCCACTGCGGTGTACTCGAAGAATC 110 279 148 Antisense
AATCCGATTTTTCCGCCGAATATGA 242 165 169 Antisense
GATTTGTGGAAGACCCCTTGGAATT 296 427 213 Antisense
GTGGATGCGTATTTGGGAGTTTTCA 248 489 274 Antisense
TCCGATGAATTGAGACCGTGTTTTT 558 593 310 Antisense
ATGGCACATTTCTGATAGTTTCGCA 260 53 356 Antisense
GAAACGAGACACTATCGTCGTCTGC 706 357 399 Antisense
TCAACACAAATCCTGGACGCTTCCA 339 629 473 Antisense
ACGCTTCCAAGCCAATCGACGGATT 653 91 489 Antisense
ACTTCCTCAACGACCTGGACGTAAT 570 99 522 Antisense
Sequence Source Affymetrix Proprietary Database