[Home] | [Total List]

[178795_at]

Description F20G4.2 /REP_DB=WormBase Gene ID /WP=CE05674 /TR=Q19657 /GB=CAA99840.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 36.5
(1)
A 		22.4
(-2)
A 		17.5
(-3)
A 		46.2
(3)
A 		29
B 42.9
(3)
A 		34.3
(-0.9)
A 		29.7
(-3)
A 		39.8
(1.6)
A 		13
C 28.8
(-0.9)
A 		28.3
(-1)
A 		5.9
(-3)
A 		72.2
(3)
A 		66
avr 36.1
(0.2) 		28.3
(-1.2) 		17.7
(-3) 		52.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 36.1
(0.3)
A 		22.2
(-1.1)
A 		16.1
(-1.8)
A 		4.4
(-3)
A 		34.1
(0.1)
A 		62
(3)
P 		58
B 26.4
(-1.4)
A 		26.4
(-1.4)
A 		17.3
(-2.1)
A 		6.2
(-3)
A 		19.5
(-2)
A 		82.3
(3)
P 		76
C 24.2
(-0)
A 		42.4
(2.5)
P 		34.1
(1.3)
A 		3
(-2.9)
A 		2.3
(-3)
A 		46.3
(3)
P 		44
avr 28.9
(-0.5) 		30.3
(-0.4) 		22.5
(-1.2) 		4.5
(-3) 		18.6
(-1.6) 		63.5
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.3
(3)
A 		4.9
(-2.8)
A 		4.6
(-3)
A 		6.8
(-1.5)
A 		9
B 13.7
(3)
A 		8.5
(-1.6)
A 		6.9
(-3)
A 		8.5
(-1.6)
A 		7
C 9.5
(1.4)
A 		8.1
(0.6)
A 		2.1
(-3)
A 		12.2
(3)
A 		10
avr 12.2
(3) 		7.2
(-0.9) 		4.5
(-3) 		9.2
(0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 6.7
(-0.6)
A 		7.9
(-0.1)
A 		3.5
(-2)
A 		1.1
(-3)
A 		10.3
(0.9)
A 		15.1
(3)
P 		14
B 9.2
(-1.4)
A 		8.8
(-1.5)
A 		4.2
(-2.5)
A 		1.6
(-3)
A 		7.9
(-1.7)
A 		30.7
(3)
P 		29
C 9
(0.4)
A 		12.9
(2)
P 		8.7
(0.3)
A 		0.6
(-3)
A 		0.7
(-3)
A 		15.5
(3)
P 		15
avr 8.3
(-0.8) 		9.9
(-0.3) 		5.5
(-1.6) 		1.1
(-3) 		6.3
(-1.4) 		20.4
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2083
Sequence Type Exemplar sequence
Representative Public ID F20G4.2 NCBI
Target Description F20G4.2 /REP_DB=WormBase Gene ID /WP=CE05674 /TR=Q19657 /GB=CAA99840.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059783 NCBI Caenorhabditis elegans F20G4.2 (F20G4.2) mRNA, complete cds. 11/11 None
F20G4.2 ENSEMBL cdna:known chromosome:CEL140:I:7924282:7926465:-1 gene:F20G4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013791 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013802 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7924212-7926396(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20G4.2
Entrez Gene 172560 Entrez gene
SwissProt Q19657 EMBL-EBI
WormBase CE05674 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99840 Hypothetical protein F20G4.2 [Caenorhabditis elegans] ref|NP_492184.1| F20G4.2 [Caenorhabditis elegans] 0.0
blast CAE63723 Hypothetical protein CBG08248 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:178795_AT
gaaactgagattcgcggaacctgatgaaccaacttgggattataataatgattatcaaaa
aacggagcatttcatagaagaaagctgtggattgcatctacaaaacagtgtatttcgaga
atatgcaattgatattgagacttgtggtccatctgtgtttatagaatcaactaattgtgc
tggaccagatgatgaaactcagaaatacaaggatgcggaatcaggtgcaatgatgtctaa
ttcatcttttcaagaaagtcaagaagaggacatttacgatagagatgaactaactggatt
atcagctcgtttcgcctcgttaatgtccagcaaagcaagtgagagacgtctgttgatgag
tgacgtagtgtttggcactgtgccaaagaataaattggtccagttggattgcactacttt
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGAGATTCGCGGAACCTGAT 387 357 933 Antisense
CGGAACCTGATGAACCAACTTGGGA 447 241 947 Antisense
GAAAGCTGTGGATTGCATCTACAAA 228 359 1012 Antisense
GAGACTTGTGGTCCATCTGTGTTTA 626 393 1069 Antisense
TCAACTAATTGTGCTGGACCAGATG 195 629 1099 Antisense
GCAATGATGTCTAATTCATCTTTTC 549 321 1159 Antisense
ACTGGATTATCAGCTCGTTTCGCCT 205 97 1225 Antisense
TCGCCTCGTTAATGTCCAGCAAAGC 484 599 1244 Antisense
GTGAGAGACGTCTGTTGATGAGTGA 56 483 1271 Antisense
GTGACGTAGTGTTTGGCACTGTGCC 344 483 1292 Antisense
GGTCCAGTTGGATTGCACTACTTTA 662 501 1329 Antisense
Sequence Source Affymetrix Proprietary Database