[Home] | [Total List]

[178794_at]

Description F56G4.1 /REP_DB=WormBase Gene ID /WP=CE18756 /TR=Q9XTL6 /GB=CAB04489.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 53      6grp_total > 73      4grp_total > 40      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 353.9
(-3)
P 		626.6
(3)
P 		556.8
(1.5)
P 		473.6
(-0.4)
P 		273
B 447.1
(-1.7)
P 		421.9
(-3)
P 		542.1
(3)
P 		519.3
(1.9)
P 		120
C 482.5
(-3)
P 		510.3
(-2.1)
P 		670.3
(3)
P 		516.6
(-1.9)
P 		188
avr 427.8
(-3) 		519.6
(0.4) 		589.7
(3) 		503.2
(-0.2) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1046
1 2 3 4 5 6 range
A 395.4
(-3)
P 		531.8
(-2.1)
P 		1246.6
(2.6)
P 		1308.8
(3)
P 		945.7
(0.6)
P 		758.3
(-0.6)
P 		913
B 421.5
(-3)
P 		696.3
(-1.1)
P 		1237.9
(2.6)
P 		1290.4
(3)
P 		1090
(1.6)
P 		989.3
(0.9)
P 		869
C 430.6
(-3)
P 		647.5
(-1.7)
P 		889.9
(-0.3)
P 		1441
(3)
P 		898.7
(-0.2)
P 		1058.2
(0.7)
P 		1010
avr 415.8
(-3) 		625.2
(-1.7) 		1124.8
(1.6) 		1346.7
(3) 		978.1
(0.6) 		935.3
(0.3) 		931
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 128.9
(1.7)
P 		136
(2.2)
P 		145.6
(3)
P 		69.3
(-3)
P 		76
B 142.6
(3)
P 		104.2
(-3)
P 		125.6
(0.3)
P 		110.7
(-2)
P 		38
C 159.7
(-0)
P 		146.7
(-0.6)
P 		233.6
(3)
P 		87.1
(-3)
P 		147
avr 143.7
(1.1) 		129
(0) 		168.3
(3) 		89
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 72.9
(-3)
P 		189.1
(-0.3)
P 		271.5
(1.6)
P 		331.9
(3)
P 		285.4
(1.9)
P 		184.6
(-0.4)
P 		259
B 146.7
(-3)
P 		231.8
(-1.3)
P 		300.6
(0.1)
P 		341.8
(1)
P 		442.9
(3)
P 		368.9
(1.5)
P 		296
C 159.6
(-3)
P 		197.6
(-1.8)
P 		226.5
(-0.9)
P 		289.8
(1)
P 		290.8
(1)
P 		354.2
(3)
P 		195
avr 126.4
(-3) 		206.2
(-0.8) 		266.2
(0.9) 		321.2
(2.5) 		339.7
(3) 		302.6
(2) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1036
Sequence Type Exemplar sequence
Representative Public ID F56G4.1 NCBI
Target Description F56G4.1 /REP_DB=WormBase Gene ID /WP=CE18756 /TR=Q9XTL6 /GB=CAB04489.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060507 NCBI Caenorhabditis elegans F56G4.1 (F56G4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000025963 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11347965:11352661:-1 11/11 None
F56G4.1 ENSEMBL cdna:known chromosome:CEL140:I:11347965:11355412:-1 gene:F56G4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025961 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11347895-11355343(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56G4.1
Entrez Gene 173024 Entrez gene
SwissProt Q9XTL6 EMBL-EBI
WormBase CE18756 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05575 Hypothetical protein F56G4.1 [Caenorhabditis elegans] emb|CAB04489.1| Hypothetical protein F56G4.1 [Caenorhabditis elegans] ref|NP_492908.1| F56G4.1 [Caenorhabditis elegans] 0.0
blast CAB11538 Hypothetical protein H12I19.4 [Caenorhabditis elegans] ref|NP_502710.2| H12I19.4 [Caenorhabditis elegans] 0.0
blast CAB03808 Hypothetical protein B0399.2 [Caenorhabditis elegans] emb|CAA21519.2| Hypothetical protein B0399.2 [Caenorhabditis elegans] ref|NP_507799.2| B0399.2 [Caenorhabditis elegans] 0.0
blast CAB03808 Hypothetical protein B0399.2 [Caenorhabditis elegans] emb|CAA21519.2| Hypothetical protein B0399.2 [Caenorhabditis elegans] ref|NP_507799.2| B0399.2 [Caenorhabditis elegans] 1.0E-131
blast CAB11538 Hypothetical protein H12I19.4 [Caenorhabditis elegans] ref|NP_502710.2| H12I19.4 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.5E-22
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492908.1 16 7-26,30-49,70-89,118-140,152-174,226-248,269-291,295-317,324-346,700-717,730-748,768-790,797-816,831-853,901-919,934-956
F56G4.1 16 7-26,30-49,70-89,118-140,152-174,226-248,269-291,295-317,324-346,700-717,730-748,768-790,797-816,831-853,901-919,934-956
GENEFINDER00000025963 11 6-28,35-54,58-80,416-435,445-464,484-506,510-532,545-567,571-592,612-634,649-671
Sequence
Target Sequence 
>C. ELEGANS:178794_AT
aaagagctcacttcttcacatttgtcggaattacattgggctctttattaatccttttgg
ttattattttggataaaatagactatcaggtaattgcgattgcaatctttacttttgcaa
ttgctatgctaactctttgcgcaagtattcgagaatacaagaaggaaacgtggatgtatg
gatatgattcatcattaatccaagtctcgttaatttgccaaatatctggagtaattttca
taatttccgggtgtttcggaagggaaatgatggtcctagtcggttgtttcctatttctat
acaccactctccaagtgcgattttcatatttctacaagatctcagttgatgggacaacaa
gcattttgacttcaaaatcaacacgcgtgtttctgaaaaagtggttcgaatgcagtcttc
taattatttgcttgatttggacactggttattctagccagtcagatgatggaagaggata
cttttttgtgccagaacaaattcttcgcgtttcttattacattcttcacattgatggtgt
tagcattggttttgagagtttcctacatgtactacgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAGCTCACTTCTTCACATTTGT 234 123 2312 Antisense
GTCGGAATTACATTGGGCTCTTTAT 100 473 2335 Antisense
TGGGCTCTTTATTAATCCTTTTGGT 197 553 2348 Antisense
CAATTGCTATGCTAACTCTTTGCGC 438 179 2429 Antisense
AATCCAAGTCTCGTTAATTTGCCAA 368 167 2508 Antisense
TGATGGTCCTAGTCGGTTGTTTCCT 108 555 2579 Antisense
GTTGTTTCCTATTTCTATACACCAC 597 437 2594 Antisense
TATACACCACTCTCCAAGTGCGATT 235 657 2609 Antisense
AGTGGTTCGAATGCAGTCTTCTAAT 366 59 2711 Antisense
TCGCGTTTCTTATTACATTCTTCAC 82 601 2816 Antisense
GAGTTTCCTACATGTACTACGTTTC 482 395 2867 Antisense
Sequence Source Affymetrix Proprietary Database