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[178793_s_at]

Description W04A8.5 /REP_DB=WormBase Gene ID /WP=CE16539 /TR=Q9XUM1 /GB=CAB04905.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 22.8
(-0.1)
A 		21.1
(-0.4)
A 		4.4
(-3)
A 		42.8
(3)
A 		38
B 6.1
(-1.7)
A 		5.9
(-1.8)
A 		1.8
(-3)
A 		21.7
(3)
A 		20
C 26.2
(-0.3)
A 		3.6
(-3)
A 		4.4
(-2.9)
A 		54.5
(3)
A 		51
avr 18.4
(-0.5) 		10.2
(-1.9) 		3.5
(-3) 		39.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 9.9
(-2.5)
A 		5.3
(-2.8)
A 		2
(-3)
A 		4.8
(-2.8)
A 		6.4
(-2.7)
A 		95.8
(3)
A 		94
B 3.1
(-3)
A 		11.8
(-2.4)
A 		3
(-3)
A 		2.8
(-3)
A 		3
(-3)
A 		88.8
(3)
A 		86
C 5.2
(-2.8)
A 		6.3
(-2.7)
A 		2.9
(-3)
A 		2.9
(-3)
A 		3.3
(-3)
A 		75.2
(3)
M 		72
avr 6.1
(-2.8) 		7.8
(-2.6) 		2.6
(-3) 		3.5
(-2.9) 		4.2
(-2.9) 		86.6
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.3
(3)
A 		4.6
(-0.1)
A 		1.2
(-3)
A 		6.3
(1.3)
A 		7
B 2
(-0.7)
A 		1.4
(-1.6)
A 		0.4
(-3)
A 		4.6
(3)
A 		4
C 8.7
(2.6)
A 		1
(-3)
A 		1.5
(-2.6)
A 		9.2
(3)
A 		8
avr 6.3
(2.6) 		2.3
(-1.6) 		1
(-3) 		6.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.8
(-2.6)
A 		1.9
(-2.6)
A 		0.4
(-3)
A 		1.2
(-2.8)
A 		1.9
(-2.6)
A 		23.3
(3)
A 		23
B 1.1
(-2.9)
A 		3.9
(-2.4)
A 		0.7
(-3)
A 		0.8
(-3)
A 		1.2
(-2.9)
A 		33.1
(3)
A 		32
C 1.9
(-2.7)
A 		1.9
(-2.7)
A 		0.7
(-3)
A 		0.6
(-3)
A 		1.1
(-2.9)
A 		25.2
(3)
M 		25
avr 1.6
(-2.8) 		2.6
(-2.5) 		0.6
(-3) 		0.9
(-2.9) 		1.4
(-2.8) 		27.2
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178793_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1322
Sequence Type Exemplar sequence
Representative Public ID W04A8.5 NCBI
Target Description W04A8.5 /REP_DB=WormBase Gene ID /WP=CE16539 /TR=Q9XUM1 /GB=CAB04905.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061023 NCBI Caenorhabditis elegans W04A8.5 (W04A8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000006534 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13856528:13858931:-1 10/11 None
SNAP00000006528 ENSEMBL cdna:SNAP chromosome:CEL140:I:13857834:13858931:-1 11/11 None
W04A8.5 ENSEMBL cdna:known chromosome:CEL140:I:13857736:13858986:-1 gene:W04A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13857764-13858862(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04A8.5
Entrez Gene 173255 Entrez gene
SwissProt Q9XUM1 EMBL-EBI
WormBase CE16539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 1.0E-158
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 1.0E-131
blast CAB04904 Hypothetical protein W04A8.3 [Caenorhabditis elegans] ref|NP_493423.1| W04A8.3 [Caenorhabditis elegans] 9.0E-21
blast CAA93768 Hypothetical protein C47D12.4 [Caenorhabditis elegans] ref|NP_496494.1| C47D12.4 [Caenorhabditis elegans] 6.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-6
Sequence
Target Sequence 
>C. ELEGANS:178793_S_AT
aaccaagctctcgaagctgcgaagtatttggtggatcatttcaaatgtgacactgactct
gtatggctccgtataactcatcgaaaggaagacgaaactcgacaaatcataacttctgtc
aaggagataaacttgaacattaccaacctgcagttcaggcatgaacgtatatccagtgat
ttgttcaattggcttctagagaactgtgtacaagatgtgcatatttgggttctagagcca
caaagcatcaccgttagcaactggaatgtgttcgaaaaagtgcggaaatataatttccaa
gggatcaacttttccagccatcaagcgaatatgctattgaaatcgttgaaatcaaacaac
aattttgttcagtttcgggcaaatgatatagaaaacagtcttgatttatcggtggtattt
gaggatacaggagctacagcgaagatggatacataccgttctgttgtttttcgtccagga
ctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAAGCTCTCGAAGCTGCGAAGT 550 147 289 Antisense
TGTGACACTGACTCTGTATGGCTCC 674 555 334 Antisense
TGGCTCCGTATAACTCATCGAAAGG 462 545 352 Antisense
ACTTGAACATTACCAACCTGCAGTT 289 105 419 Antisense
CAGGCATGAACGTATATCCAGTGAT 338 203 444 Antisense
GATTTGTTCAATTGGCTTCTAGAGA 652 427 466 Antisense
GATGTGCATATTTGGGTTCTAGAGC 217 407 502 Antisense
AGAGCCACAAAGCATCACCGTTAGC 632 67 522 Antisense
TCAACTTTTCCAGCCATCAAGCGAA 294 631 593 Antisense
GATGGATACATACCGTTCTGTTGTT 607 407 732 Antisense
TCTGTTGTTTTTCGTCCAGGACTTA 268 603 748 Antisense
Sequence Source Affymetrix Proprietary Database