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[178792_at]

Description R09A8.2 /REP_DB=WormBase Gene ID /WP=CE03538 /TR=Q21853 /GB=CAA92004.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 03      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 7.3
(-2.7)
A 		14.3
(-2.1)
A 		4.1
(-3)
A 		70.4
(3)
A 		66
B 8.1
(3)
A 		7
(-0.9)
A 		6.4
(-3)
A 		7.8
(1.9)
A 		2
C 24.7
(-1.7)
A 		4.1
(-3)
A 		4.6
(-3)
A 		100.3
(3)
A 		96
avr 13.4
(-2.1) 		8.5
(-2.6) 		5
(-3) 		59.5
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 12.9
(-2)
A 		12.7
(-2)
A 		37.2
(0.7)
A 		3.7
(-3)
A 		23.2
(-0.8)
A 		58
(3)
A 		54
B 3.6
(-3)
A 		4.8
(-2.8)
A 		6.8
(-2.6)
A 		4.6
(-2.9)
A 		16.8
(-1.1)
A 		46.3
(3)
A 		43
C 1.9
(-3)
A 		14.2
(-1.4)
A 		3.2
(-2.8)
A 		1.9
(-3)
A 		10.5
(-1.9)
A 		47
(3)
P 		45
avr 6.1
(-2.7) 		10.6
(-2.1) 		15.7
(-1.4) 		3.4
(-3) 		16.8
(-1.3) 		50.4
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.7
(-2)
A 		3.1
(-1.7)
A 		1.1
(-3)
A 		10.3
(3)
A 		9
B 2.6
(3)
A 		1.7
(-1.9)
A 		1.5
(-3)
A 		1.7
(-1.9)
A 		1
C 8.2
(-0.3)
A 		1.2
(-3)
A 		1.6
(-2.8)
A 		16.9
(3)
A 		16
avr 4.5
(-0.7) 		2
(-2.6) 		1.4
(-3) 		9.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.4
(-2.4)
A 		4.5
(-1.4)
A 		8.1
(0.3)
A 		1
(-3)
A 		7
(-0.3)
A 		14.1
(3)
A 		13
B 1.2
(-3)
A 		1.6
(-2.9)
A 		1.7
(-2.8)
A 		1.2
(-3)
A 		6.8
(-0.9)
A 		17.3
(3)
A 		16
C 0.7
(-2.9)
A 		4.3
(-1.5)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		3.4
(-1.8)
A 		15.7
(3)
P 		15
avr 1.4
(-2.8) 		3.5
(-1.9) 		3.5
(-1.9) 		0.9
(-3) 		5.7
(-1.1) 		15.7
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17483
Sequence Type Exemplar sequence
Representative Public ID R09A8.2 NCBI
Target Description R09A8.2 /REP_DB=WormBase Gene ID /WP=CE03538 /TR=Q21853 /GB=CAA92004.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077707 NCBI Caenorhabditis elegans R09A8.2 (R09A8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000001744 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12619393:12623225:1 11/11 None
SNAP00000001738 ENSEMBL cdna:SNAP chromosome:CEL140:X:12621639:12623225:1 11/11 None
R09A8.2 ENSEMBL cdna:known chromosome:CEL140:X:12619393:12623225:1 gene:R09A8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12619392-12623225(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09A8.2
Entrez Gene 181409 Entrez gene
SwissProt Q21853 EMBL-EBI
WormBase CE34082 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92004 Hypothetical protein R09A8.2 [Caenorhabditis elegans] ref|NP_510108.2| R09A8.2 [Caenorhabditis elegans] 0.0
blast CAA92004 Hypothetical protein R09A8.2 [Caenorhabditis elegans] ref|NP_510108.2| R09A8.2 [Caenorhabditis elegans] 1.0E-135
blast CAA92003 Hypothetical protein R09A8.1 [Caenorhabditis elegans] ref|NP_510107.1| R09A8.1 [Caenorhabditis elegans] 4.0E-67
blast AAA96206 Hypothetical protein F02E8.4 [Caenorhabditis elegans] ref|NP_508766.1| F02E8.4 [Caenorhabditis elegans] 1.0E-45
blast AAA96206 Hypothetical protein F02E8.4 [Caenorhabditis elegans] ref|NP_508766.1| F02E8.4 [Caenorhabditis elegans] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:178792_AT
gaaacgggcccattgatacctgatctagaaatgttgtttggaaaacggtcaacatcgact
gaagcaacggttagcacgagttctcgtccattggtacctgatctaggcatgttgctcgga
aaacgtttcaaatctattgaatcgacggggagcacaagttcttgcacggacgtgcaaaat
attgatgtcattgccttcgaagaaacaaaagcccaacttcgagaaagccatggacagatg
aagaaacatgagagcagccgtgacgatgcgaatgaaaacgcgtcatttgtacattcattg
gacgtcgagtcgaatgtggattcttgttcttcgactggtactcaagaaacatcagagaaa
aaacgtcaagaaaacgttttagctgttgttccttacaatccaaaaaatatttcaacactt
gttgaagatcaatcttccaatactttgaagcgaatgcttgtggatacttcttctgatttg
ggcaaagaccaaccgccaaaaaagaaacgagttccatcatcaatctcattttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGGGCCCATTGATACCTGATC 569 355 1960 Antisense
GCAACGGTTAGCACGAGTTCTCGTC 355 319 2023 Antisense
AGTTCTCGTCCATTGGTACCTGATC 162 65 2038 Antisense
GTACCTGATCTAGGCATGTTGCTCG 464 457 2053 Antisense
GGGGAGCACAAGTTCTTGCACGGAC 592 497 2106 Antisense
GAGAGCAGCCGTGACGATGCGAATG 352 393 2209 Antisense
AACGCGTCATTTGTACATTCATTGG 482 145 2236 Antisense
AATGTGGATTCTTGTTCTTCGACTG 464 163 2272 Antisense
TTAGCTGTTGTTCCTTACAATCCAA 659 681 2338 Antisense
GTGGATACTTCTTCTGATTTGGGCA 139 489 2419 Antisense
GTTCCATCATCAATCTCATTTTCGA 400 441 2470 Antisense
Sequence Source Affymetrix Proprietary Database