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[178791_at]

Description F53B2.1 /REP_DB=WormBase Gene ID /WP=CE05915 /TR=Q20708 /GB=CAA98131.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 12
(-3)
A 		35.9
(3)
A 		17.8
(-1.5)
A 		21.2
(-0.7)
A 		24
B 2.7
(-3)
A 		3.3
(-0.8)
A 		4.3
(3)
A 		3.4
(-0.4)
A 		2
C 3.2
(-3)
A 		6
(-0.9)
A 		7.9
(0.5)
A 		11.3
(3)
A 		8
avr 6
(-3) 		15.1
(3) 		10
(-0.4) 		12
(1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 35.7
(3)
A 		0.9
(-3)
A 		3.9
(-2.5)
A 		1.3
(-2.9)
A 		3.5
(-2.6)
A 		4.3
(-2.4)
A 		35
B 3.8
(-0.6)
A 		3
(-1.4)
A 		1.4
(-3)
A 		4.7
(0.4)
A 		1.7
(-2.7)
A 		7.3
(3)
A 		6
C 2.6
(-3)
A 		5.4
(-2.3)
A 		23.4
(2.6)
A 		25
(3)
A 		4
(-2.6)
A 		11.4
(-0.6)
A 		22
avr 14
(3) 		3.1
(-3) 		9.6
(0.6) 		10.3
(1) 		3.1
(-3) 		7.7
(-0.5) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.4
(-1.3)
A 		7.8
(3)
A 		4.7
(-1)
A 		3.1
(-3)
A 		5
B 0.9
(1)
A 		0.8
(-1)
A 		1
(3)
A 		0.7
(-3)
A 		0
C 1
(-3)
A 		1.7
(-0.5)
A 		2.7
(3)
A 		1.9
(0.2)
A 		2
avr 2.1
(-2.2) 		3.4
(3) 		2.8
(0.6) 		1.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.6
(3)
A 		0.3
(-3)
A 		0.8
(-2.5)
A 		0.3
(-3)
A 		1
(-2.3)
A 		1.1
(-2.2)
A 		6
B 1.3
(-0.5)
A 		1
(-1.3)
A 		0.3
(-3)
A 		1.2
(-0.8)
A 		0.7
(-2)
A 		2.7
(3)
A 		2
C 1
(-3)
A 		1.7
(-2.2)
A 		6
(3)
A 		5
(1.8)
A 		1.3
(-2.6)
A 		3.8
(0.4)
A 		5
avr 3
(3) 		1
(-3) 		2.4
(1.2) 		2.2
(0.6) 		1
(-3) 		2.5
(1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9791
Sequence Type Exemplar sequence
Representative Public ID F53B2.1 NCBI
Target Description F53B2.1 /REP_DB=WormBase Gene ID /WP=CE05915 /TR=Q20708 /GB=CAA98131.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069994 NCBI Caenorhabditis elegans F53B2.1 (F53B2.1) mRNA, complete cds. 11/11 A 
F53B2.1 ENSEMBL cdna:known chromosome:CEL140:IV:12516321:12518100:-1 gene:F53B2.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026518 6/11 Cross Hyb Matching Probes None
GENEFINDER00000026529 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12516326-12518106(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B2.1
Entrez Gene 186149 Entrez gene
SwissProt Q20708 EMBL-EBI
WormBase CE05915 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98131 Hypothetical protein F53B2.1 [Caenorhabditis elegans] ref|NP_502395.1| F53B2.1 [Caenorhabditis elegans] 1.0E-139
blast CAA94367 Hypothetical protein R11A8.2 [Caenorhabditis elegans] ref|NP_501910.1| R11A8.2 [Caenorhabditis elegans] 7.0E-69
blast CAE70865 Hypothetical protein CBG17653 [Caenorhabditis briggsae] 6.0E-57
Sequence
Target Sequence 
>C. ELEGANS:178791_AT
gaagatcgagggaatactcattacaatatcaggcaatcctggttggaaactgtaattcct
cgagaaatcggtgaaaagctcatgattgtcgctggtaaacgtagtggccagctagctttg
atgcttggtaaggataaacggaaagaaaaattgacagcacgtcttgtggcgacaaacgat
gtggttaccgcgtactttgaagatgtttgtgcagtaaagattcgacacgaagaagattcc
cctcaactctatggaatgactcaattcttattcaaaattttgttggtttgcacaataatc
aatgaatttgatacactgaatatattattctatgttcctacattatcccatagtcatatc
tcattcaatacaaaattggctcaacttcttgctacttctggtcatcaggttacggtactt
cttgctcaagttgatagaaaatgcattaaacttgaaaaaaaaccgacgattctgccgatt
ttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATCGAGGGAATACTCATTACA 110 337 394 Antisense
ACTCATTACAATATCAGGCAATCCT 240 101 409 Antisense
GGTAAACGTAGTGGCCAGCTAGCTT 622 503 487 Antisense
GTGGCCAGCTAGCTTTGATGCTTGG 526 491 497 Antisense
GCTAGCTTTGATGCTTGGTAAGGAT 66 303 504 Antisense
GATGTTTGTGCAGTAAAGATTCGAC 49 411 595 Antisense
GAAGATTCCCCTCAACTCTATGGAA 572 337 625 Antisense
TCCCCTCAACTCTATGGAATGACTC 415 595 631 Antisense
TATTCTATGTTCCTACATTATCCCA 39 665 719 Antisense
AAAACCGACGATTCTGCCGATTTTG 425 131 852 Antisense
ACCGACGATTCTGCCGATTTTGCAA 556 89 855 Antisense
Sequence Source Affymetrix Proprietary Database