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[178790_at]

Description F47B8.3 /REP_DB=WormBase Gene ID /WP=CE10636 /TR=Q20519 /GB=CAB01194.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 61      6grp_total > 41      4grp_total > 22      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 546
1 2 3 4 range
A 396.2
(3)
P 		232.3
(-0.4)
P 		108.5
(-3)
P 		319
(1.4)
P 		288
B 501.3
(1)
P 		243.4
(-2.5)
P 		202.4
(-3)
P 		652.2
(3)
P 		450
C 654.3
(3)
P 		225.4
(-3)
P 		321.2
(-1.7)
P 		592.5
(2.1)
P 		429
avr 517.3
(2.9) 		233.7
(-2.6) 		210.7
(-3) 		521.2
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 703
1 2 3 4 5 6 range
A 410.2
(-0.4)
P 		509.3
(0.5)
P 		803.3
(3)
P 		609.6
(1.3)
P 		398.1
(-0.5)
P 		100.8
(-3)
P 		703
B 399.2
(0.7)
P 		589.5
(3)
P 		466.3
(1.5)
P 		566.2
(2.7)
P 		277.4
(-0.9)
P 		103.5
(-3)
P 		486
C 496.3
(2.9)
P 		350.9
(0.6)
P 		305.1
(-0.2)
P 		501.9
(3)
P 		368.3
(0.8)
P 		131.1
(-3)
P 		371
avr 435.2
(1.3) 		483.2
(2) 		524.9
(2.5) 		559.2
(3) 		347.9
(0.2) 		111.8
(-3) 		447
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 144.3
(3)
P 		50.4
(-1.9)
P 		28.4
(-3)
P 		46.7
(-2.1)
P 		116
B 159.9
(3)
P 		60.1
(-2.3)
P 		46.9
(-3)
P 		139
(1.9)
P 		113
C 216.6
(3)
P 		64.8
(-3)
P 		111.9
(-1.1)
P 		99.9
(-1.6)
P 		152
avr 173.6
(3) 		58.4
(-3) 		62.4
(-2.8) 		95.2
(-1.1) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 75.6
(-1)
P 		181.1
(3)
P 		175
(2.8)
P 		154.6
(2)
P 		120.1
(0.7)
P 		24.5
(-3)
P 		157
B 138.9
(0.8)
P 		196.2
(3)
P 		113.2
(-0.2)
P 		150
(1.2)
P 		112.7
(-0.2)
P 		38.6
(-3)
P 		158
C 183.9
(3)
P 		107.1
(-0.3)
P 		77.6
(-1.6)
P 		100.9
(-0.6)
P 		119.2
(0.2)
P 		43.9
(-3)
P 		140
avr 132.8
(1.6) 		161.5
(3) 		121.9
(1.1) 		135.2
(1.7) 		117.3
(0.9) 		35.7
(-3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13395
Sequence Type Exemplar sequence
Representative Public ID F47B8.3 NCBI
Target Description F47B8.3 /REP_DB=WormBase Gene ID /WP=CE10636 /TR=Q20519 /GB=CAB01194.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074148(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074148 NCBI Caenorhabditis elegans F47B8.3 (F47B8.3) mRNA, complete cds. 11/11 None
SNAP00000011437 ENSEMBL cdna:SNAP chromosome:CEL140:V:14324067:14325464:-1 11/11 None
GENEFINDER00000011455 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14324067:14325464:-1 11/11 None
F47B8.3 ENSEMBL cdna:known chromosome:CEL140:V:14324067:14325464:-1 gene:F47B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14324066-14325464(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B8.3
Entrez Gene 185896 Entrez gene
SwissProt Q20519 EMBL-EBI
WormBase CE10636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01194 Hypothetical protein F47B8.3 [Caenorhabditis elegans] ref|NP_506549.1| F47B8.3 [Caenorhabditis elegans] 1.0E-148
blast CAE60924 Hypothetical protein CBG04646 [Caenorhabditis briggsae] 1.0E-73
blast CAB01193 Hypothetical protein F47B8.4 [Caenorhabditis elegans] ref|NP_506550.1| F47B8.4 [Caenorhabditis elegans] 4.0E-73
Sequence
Target Sequence 
>C. ELEGANS:178790_AT
aagacctcagaaacgtggcttcggagtacattgaattgcaaaattcacagctagcaaaaa
gaaaattggacaagttcgacgatattttgaatctgatcgttttggaaataaatgaactag
agagagacaatttctcaattcaaaaagttgagaaactaattaacaagcttaacccatttg
atgttccaacttttgaaactttggaagaagacactgcaaatccagaaaaactacccgtta
gcagaaaagccacaaattttccagatcaattgacaaaacaaacagctcaaagggaggaag
aaagtgaaattcgaaatgataattcaaaaatggagaatggtcaagctaaaatttacaaaa
tcttccggaaaccagttcttctttttgtaaattatcttgaggatgagcaaactctatcta
caatacaatcactcagtgataatcaaatagattacactatatttgatgtttccacagatt
ctgaaattcgatttatttcaaaagcattatcagattgtgaaaccttccctcagctgttcg
ttgatggagcttttgaaccattgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACCTCAGAAACGTGGCTTCGGA 589 153 251 Antisense
GAAACGTGGCTTCGGAGTACATTGA 468 355 260 Antisense
AAAATTGGACAAGTTCGACGATATT 400 133 312 Antisense
GATATTTTGAATCTGATCGTTTTGG 591 425 331 Antisense
GATGTTCCAACTTTTGAAACTTTGG 225 409 430 Antisense
GGAAGAAGACACTGCAAATCCAGAA 545 531 453 Antisense
ATCCAGAAAAACTACCCGTTAGCAG 506 39 470 Antisense
ACTACCCGTTAGCAGAAAAGCCACA 518 5 480 Antisense
AAAGCCACAAATTTTCCAGATCAAT 421 125 496 Antisense
CAGTTCTTCTTTTTGTAAATTATCT 615 205 623 Antisense
GATGGAGCTTTTGAACCATTGTCAA 583 407 793 Antisense
Sequence Source Affymetrix Proprietary Database