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[178788_s_at]

Description F45B8.3 /REP_DB=WormBase Gene ID /WP=CE23731 /TR=O45522 /GB=CAB05726.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_high_8_8 > 46      6grp_highest_nonorm > 81      6grp_total > 11      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 223.8
(-3)
P 		568.8
(3)
P 		571.1
(3)
P 		230.1
(-2.9)
P 		347
B 169.3
(-3)
M 		524.7
(1.2)
P 		682.9
(3)
P 		232.2
(-2.3)
P 		514
C 183.1
(-3)
P 		536.8
(3)
P 		531.7
(2.9)
P 		235.7
(-2.1)
P 		354
avr 192.1
(-3) 		543.4
(2.2) 		595.2
(3) 		232.7
(-2.4) 		403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 243.4
(-1)
P 		337.1
(3)
P 		239.4
(-1.2)
P 		284
(0.7)
P 		307.3
(1.7)
P 		196.2
(-3)
P 		141
B 204.8
(-1.7)
P 		418.5
(3)
P 		341.9
(1.3)
P 		229.5
(-1.2)
P 		344.2
(1.4)
P 		145.5
(-3)
P 		273
C 269.7
(-0.6)
P 		465.6
(3)
P 		237.3
(-1.2)
P 		209.3
(-1.7)
P 		279.1
(-0.4)
P 		141.2
(-3)
P 		324
avr 239.3
(-1.1) 		407.1
(3) 		272.9
(-0.3) 		240.9
(-1.1) 		310.2
(0.6) 		161
(-3) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 81.5
(-0.5)
P 		123.5
(1.7)
P 		149.3
(3)
P 		33.7
(-3)
P 		116
B 54
(-2.8)
M 		129.6
(1.4)
P 		158.2
(3)
P 		49.5
(-3)
P 		109
C 60.6
(-2.1)
P 		154.3
(1.7)
P 		185.3
(3)
P 		39.7
(-3)
P 		146
avr 65.4
(-1.8) 		135.8
(1.6) 		164.3
(3) 		41
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 44.9
(-3)
P 		119.9
(3)
P 		52.1
(-2.4)
P 		72
(-0.8)
P 		92.7
(0.8)
P 		47.8
(-2.8)
P 		75
B 71.3
(-1.8)
P 		139.3
(3)
P 		83
(-1)
P 		60.8
(-2.5)
P 		139.9
(3)
P 		54.3
(-3)
P 		86
C 100
(0.5)
P 		142.1
(3)
P 		60.4
(-1.9)
P 		42.1
(-3)
P 		90.3
(-0.1)
P 		47.3
(-2.7)
P 		100
avr 72.1
(-1.4) 		133.8
(3) 		65.2
(-1.9) 		58.3
(-2.4) 		107.6
(1.1) 		49.8
(-3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178788_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17605
Sequence Type Exemplar sequence
Representative Public ID F45B8.3 NCBI
Target Description F45B8.3 /REP_DB=WormBase Gene ID /WP=CE23731 /TR=O45522 /GB=CAB05726.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078080 NCBI Caenorhabditis elegans F45B8.3 (F45B8.3) mRNA, complete cds. 11/11 None
SNAP00000024497 ENSEMBL cdna:SNAP chromosome:CEL140:X:14960563:14961432:-1 11/11 None
GENEFINDER00000024503 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14960563:14961432:-1 11/11 None
F45B8.3 ENSEMBL cdna:known chromosome:CEL140:X:14960506:14961448:-1 gene:F45B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14960562-14961432(-) 96.28 100.0
Public Domain and Genome References
Gene Title
Ensembl F45B8.3
Entrez Gene 181589 Entrez gene
SwissProt O45522 EMBL-EBI
WormBase CE23731 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05726 Hypothetical protein F45B8.3 [Caenorhabditis elegans] ref|NP_510481.1| F45B8.3 [Caenorhabditis elegans] 2.0E-32
blast CAE63278 Hypothetical protein CBG07655 [Caenorhabditis briggsae] 3.0E-29
Sequence
Target Sequence 
>C. ELEGANS:178788_S_AT
gatctgtatgccaggagtgcccatcttgctgtggaaatgacggtccgcaaccattcaatc
cagttttcaatattcactttaactgttgtggtgcccctcggccatctccatcttgctgcc
catacgtcccaccagcccctcttccaccaccaccaccaccagcatcaccatgctgtggac
catctccagttccagctccatgctgcccaccgccaccggctccagctgctccatgctgcc
caccgccaccaccaccaactccatccccacttgtctgttgtaagcaggctccagttccag
aaaatccatgctgccaaatcgttgccgctgcaatgccaccaccaccttctgctccagctt
gttgtgttgctgctcctgttccaacaaacccatgctgccagccagctccccgtccagcgc
catgcgtttgctcggcaccaagacctgtgccatgcagatgcggagctccacctatggaat
gcccaaattgtgatatgccagctccacgatgctccatgatggctccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTGTATGCCAGGAGTGCCCATC 200 419 137 Antisense
GAGTGCCCATCTTGCTGTGGAAATG 119 401 151 Antisense
TCCGCAACCATTCAATCCAGTTTTC 560 595 180 Antisense
AGCATCACCATGCTGTGGACCATCT 613 77 297 Antisense
GTAAGCAGGCTCCAGTTCCAGAAAA 696 461 416 Antisense
AAATCCATGCTGCCAAATCGTTGCC 221 119 438 Antisense
GCTCCAGCTTGTTGTGTTGCTGCTC 26 299 487 Antisense
GCTCGGCACCAAGACCTGTGCCATG 661 299 566 Antisense
TGTGCCATGCAGATGCGGAGCTCCA 306 557 582 Antisense
ATTGTGATATGCCAGCTCCACGATG 205 3 623 Antisense
CACGATGCTCCATGATGGCTCCAAT 643 197 641 Antisense
Sequence Source Affymetrix Proprietary Database