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[178786_s_at]

Description D1081.7 /REP_DB=WormBase Gene ID /WP=CE05539 /TR=Q18960 /GB=CAB00028.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 32      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 136
(-3)
P 		172.5
(-2.1)
P 		367.7
(3)
P 		221.2
(-0.8)
P 		232
B 165.4
(-3)
P 		180.3
(-2.1)
P 		195.8
(-1.1)
P 		263.8
(3)
P 		98
C 181.1
(-2.5)
P 		171.6
(-3)
P 		278.4
(3)
P 		210.5
(-0.8)
P 		107
avr 160.8
(-3) 		174.8
(-2.3) 		280.6
(3) 		231.8
(0.6) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1422
1 2 3 4 5 6 range
A 179
(-2.8)
P 		133.5
(-3)
P 		185.2
(-2.8)
P 		382.8
(-1.8)
P 		987.2
(1.1)
P 		1392.8
(3)
P 		1259
B 162.6
(-3)
P 		199.9
(-2.8)
P 		186
(-2.9)
P 		384.7
(-2)
P 		915.8
(0.5)
P 		1472.5
(3)
P 		1310
C 147.5
(-3)
P 		286.4
(-2.4)
P 		187.6
(-2.8)
P 		402.3
(-1.9)
P 		793.4
(-0.2)
P 		1555.1
(3)
P 		1408
avr 163
(-3) 		206.6
(-2.8) 		186.3
(-2.9) 		389.9
(-2) 		898.8
(0.4) 		1473.5
(3) 		1311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 49.5
(-1.4)
P 		37.4
(-2.5)
P 		96.1
(3)
P 		32.4
(-3)
P 		64
B 52.7
(1.2)
P 		44.5
(-3)
P 		45.4
(-2.5)
P 		56.2
(3)
P 		12
C 59.9
(-0.6)
P 		49.3
(-1.7)
P 		97
(3)
P 		35.5
(-3)
P 		62
avr 54
(-1) 		43.7
(-2.6) 		79.5
(3) 		41.4
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 33
(-3)
P 		47.5
(-2.7)
P 		40.3
(-2.9)
P 		97.1
(-1.7)
P 		297.9
(2.2)
P 		339.1
(3)
P 		306
B 56.6
(-2.9)
P 		66.5
(-2.7)
P 		45.2
(-3)
P 		101.9
(-2.3)
P 		372.1
(0.9)
P 		549.1
(3)
P 		504
C 54.7
(-2.9)
P 		87.4
(-2.5)
P 		47.8
(-3)
P 		80.9
(-2.6)
P 		256.7
(-0.3)
P 		520.6
(3)
P 		473
avr 48.1
(-2.9) 		67.1
(-2.7) 		44.4
(-3) 		93.3
(-2.3) 		308.9
(0.7) 		469.6
(3) 		425
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178786_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.889
Sequence Type Exemplar sequence
Representative Public ID D1081.7 NCBI
Target Description D1081.7 /REP_DB=WormBase Gene ID /WP=CE05539 /TR=Q18960 /GB=CAB00028.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059901 NCBI Caenorhabditis elegans D1081.7 (D1081.7) mRNA, complete cds. 11/11 None
SNAP00000043202 ENSEMBL cdna:SNAP chromosome:CEL140:I:8495768:8498773:1 11/11 None
GENEFINDER00000043210 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8495768:8499313:1 11/11 None
D1081.7.2 ENSEMBL cdna:known chromosome:CEL140:I:8495745:8499360:1 gene:D1081.7 11/11 None
D1081.7.1 ENSEMBL cdna:known chromosome:CEL140:I:8495745:8499056:1 gene:D1081.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8495698-8498704(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1081.7
Entrez Gene 172638 Entrez gene
SwissProt Q18960 EMBL-EBI
WormBase CE05539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00028 Hypothetical protein D1081.7 [Caenorhabditis elegans] ref|NP_492302.1| D1081.7 [Caenorhabditis elegans] 0.0
blast CAE67119 Hypothetical protein CBG12533 [Caenorhabditis briggsae] 1.0E-170
blast CAE67119 Hypothetical protein CBG12533 [Caenorhabditis briggsae] 1.0E-169
blast CAE67119 Hypothetical protein CBG12533 [Caenorhabditis briggsae] 1.0E-168
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043210 1 840-862
Sequence
Target Sequence 
>C. ELEGANS:178786_S_AT
tggagtactgggtttgacgctttctgagcaggatgtgatgttcgaaaacattgataatga
tgatacaaaacgatttgtgggtggatattttcatggaaacgatgacagaattcttaacat
cgatatggtttggaaaaatgagcgtggtcaatttgagtggctttcacaaattgtcaagag
acgtggagcagttacttcgtccgatgccaacatcattcactttccacattctgcactcga
tgtgataaagtctgttggaccagattgttcggtgtgctttgtcgactattcagttcgtga
tgaatctgcaacatcttcattgatggaatcgactagaattgttcatgatagtcgtgaatc
tatgacaactacttatgttggtgagatgccaagcccaattatcgaagaaatcgatgcaac
atcttcatttgacccaaaactcttgaatctccattcattgttcgataagttaatcgagga
acagaatgttactatgattgtggggatgttccaattcgttcgaagtttgaaggatttatt
cggcgataacaatgaatgggaacgcttgctcacgtacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTACTGGGTTTGACGCTTTCT 294 549 1971 Antisense
GTGGAGCAGTTACTTCGTCCGATGC 236 491 2153 Antisense
GTCCGATGCCAACATCATTCACTTT 188 477 2169 Antisense
CTTTCCACATTCTGCACTCGATGTG 498 223 2190 Antisense
GGACCAGATTGTTCGGTGTGCTTTG 282 523 2227 Antisense
GTGTGCTTTGTCGACTATTCAGTTC 146 487 2242 Antisense
GTGAGATGCCAAGCCCAATTATCGA 241 483 2351 Antisense
GCAACATCTTCATTTGACCCAAAAC 640 319 2386 Antisense
GAATCTCCATTCATTGTTCGATAAG 176 329 2415 Antisense
GGGGATGTTCCAATTCGTTCGAAGT 470 497 2472 Antisense
AATGGGAACGCTTGCTCACGTACAT 512 163 2525 Antisense
Sequence Source Affymetrix Proprietary Database