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[178785_s_at]

Description W09H1.3 /REP_DB=WormBase Gene ID /WP=CE16573 /TR=O45901 /GB=CAB04956.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 06      6grp_total > 07      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 317.1
(3)
P 		181.5
(-3)
P 		204.5
(-2)
P 		183.4
(-2.9)
A 		136
B 274.7
(3)
P 		227.4
(1.3)
P 		221.6
(1.1)
P 		107.8
(-3)
A 		167
C 386.1
(3)
P 		266.1
(-0)
P 		207.2
(-1.5)
M 		146.4
(-3)
A 		240
avr 326
(3) 		225
(-0.4) 		211.1
(-0.8) 		145.9
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 167.8
(-1.7)
P 		341.4
(3)
P 		222.2
(-0.2)
P 		197.4
(-0.9)
P 		119.5
(-3)
P 		212
(-0.5)
P 		222
B 202.3
(3)
P 		139.9
(-1.2)
P 		197
(2.6)
P 		185.6
(1.9)
A 		113.9
(-3)
A 		144.4
(-0.9)
P 		88
C 430.6
(3)
P 		162.4
(-2.2)
P 		190.5
(-1.7)
P 		186.7
(-1.8)
A 		227.5
(-1)
P 		123.7
(-3)
P 		307
avr 266.9
(3) 		214.6
(0.2) 		203.2
(-0.4) 		189.9
(-1.1) 		153.6
(-3) 		160
(-2.7) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 115.5
(3)
P 		39.4
(-2.1)
P 		53.5
(-1.2)
P 		26.8
(-3)
A 		89
B 87.6
(3)
P 		56.2
(0.1)
P 		51.3
(-0.4)
P 		23
(-3)
A 		65
C 127.8
(3)
P 		76.5
(0)
P 		72.2
(-0.2)
M 		24.7
(-3)
A 		103
avr 110.3
(3) 		57.4
(-0.7) 		59
(-0.6) 		24.8
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 30.9
(-3)
P 		121.4
(3)
P 		48.4
(-1.8)
P 		50.1
(-1.7)
P 		36.1
(-2.7)
P 		51.6
(-1.6)
P 		91
B 70.4
(3)
P 		46.6
(-2.9)
P 		47.8
(-2.6)
P 		49.2
(-2.3)
A 		46.3
(-3)
A 		53.9
(-1.1)
P 		24
C 159.6
(3)
P 		49.5
(-2.4)
P 		48.5
(-2.5)
P 		37.6
(-3)
A 		73.6
(-1.2)
P 		41.4
(-2.8)
P 		122
avr 87
(3) 		72.5
(0.9) 		48.2
(-2.6) 		45.6
(-3) 		52
(-2.1) 		49
(-2.5) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178785_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3517
Sequence Type Exemplar sequence
Representative Public ID W09H1.3 NCBI
Target Description W09H1.3 /REP_DB=WormBase Gene ID /WP=CE16573 /TR=O45901 /GB=CAB04956.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064393(11), NM_064397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064393 NCBI Caenorhabditis elegans F32A11.1 (F32A11.1) mRNA, complete cds. 11/11 A 
NM_064397 NCBI Caenorhabditis elegans W09H1.3 (W09H1.3) mRNA, complete cds. 11/11 A 
SNAP00000006597 ENSEMBL cdna:SNAP chromosome:CEL140:II:13157235:13159991:1 11/11 None
GENEFINDER00000006605 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13157235:13159991:1 11/11 None
SNAP00000010987 ENSEMBL cdna:SNAP chromosome:CEL140:II:13184330:13184899:1 11/11 None
F32A11.1 ENSEMBL cdna:known chromosome:CEL140:II:13157231:13160300:1 gene:F32A11.1 11/11 A 
W09H1.3 ENSEMBL cdna:known chromosome:CEL140:II:13184330:13184899:1 gene:W09H1.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13184326-13184896(+) 92.14 100.0
Public Domain and Genome References
Gene Title

Ensembl F32A11.1
W09H1.3
Entrez Gene 174959 Entrez gene
174962 Entrez gene
SwissProt O62198 EMBL-EBI
O45901 EMBL-EBI
WormBase CE17737 Wormbase
CE16573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04226 Hypothetical protein F32A11.1 [Caenorhabditis elegans] ref|NP_496794.1| F32A11.1 [Caenorhabditis elegans] 1.0E-166
blast CAE59437 Hypothetical protein CBG02810 [Caenorhabditis briggsae] 1.0E-159
blast CAB04956 Hypothetical protein W09H1.3 [Caenorhabditis elegans] ref|NP_496798.1| W09H1.3 [Caenorhabditis elegans] 1.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496794.1 1 38-57
F32A11.1 1 38-57
SNAP00000006597 1 38-57
GENEFINDER00000006605 1 38-57
Sequence
Target Sequence 
>C. ELEGANS:178785_S_AT
gagctggaattaaagggacgagtacgagaggtgcttcccagtggtgaactccgcttggaa
catgagccaattatgaagattccgttccttccaaagcgaaagaatgtcgatacgggcctt
ctgaatctgcggctggccggtgtagagctctctcaatctggacagcaatttttggcgaag
gattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTGGAATTAAAGGGACGAGTAC 167 383 37 Antisense
AATTATGAAGATTCCGTTCCTTCCA 284 175 105 Antisense
TGAAGATTCCGTTCCTTCCAAAGCG 707 573 110 Antisense
TCCGTTCCTTCCAAAGCGAAAGAAT 59 595 117 Antisense
GCGAAAGAATGTCGATACGGGCCTT 567 287 132 Antisense
ATGTCGATACGGGCCTTCTGAATCT 446 47 140 Antisense
TTCTGAATCTGCGGCTGGCCGGTGT 705 691 155 Antisense
TCTGCGGCTGGCCGGTGTAGAGCTC 387 607 162 Antisense
CCGGTGTAGAGCTCTCTCAATCTGG 589 263 173 Antisense
GAGCTCTCTCAATCTGGACAGCAAT 261 387 181 Antisense
GACAGCAATTTTTGGCGAAGGATTT 364 351 197 Antisense
Sequence Source Affymetrix Proprietary Database