[Home] | [Total List]

[178784_at]

Description W09H1.3 /REP_DB=WormBase Gene ID /WP=CE16573 /TR=O45901 /GB=CAB04956.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 34.5
(-2.1)
A 		25.4
(-3)
A 		34
(-2.2)
A 		89.5
(3)
A 		64
B 8
(-3)
A 		23.7
(-1.2)
A 		57.4
(2.6)
A 		61.3
(3)
A 		53
C 23.7
(-3)
A 		61.9
(0.8)
A 		28
(-2.6)
A 		84.6
(3)
A 		61
avr 22.1
(-3) 		37
(-1.4) 		39.8
(-1.1) 		78.5
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 47.4
(3)
A 		7.3
(-2.7)
A 		6.6
(-2.8)
A 		16.9
(-1.4)
A 		16.2
(-1.5)
A 		5.4
(-3)
A 		42
B 6.5
(-2.8)
A 		12.3
(-1.6)
A 		6.7
(-2.8)
A 		8.6
(-2.4)
A 		33.6
(3)
A 		5.6
(-3)
A 		28
C 35
(3)
A 		20.2
(0.3)
A 		8.6
(-1.9)
A 		8.8
(-1.8)
A 		19.3
(0.1)
A 		2.4
(-3)
A 		33
avr 29.6
(3) 		13.3
(-0.9) 		7.3
(-2.3) 		11.4
(-1.4) 		23
(1.4) 		4.5
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.5
(2.5)
A 		5.5
(-3)
A 		8.9
(-0.3)
A 		13.1
(3)
A 		8
B 2.5
(-3)
A 		5.9
(-1.1)
A 		13.3
(3)
A 		13.1
(2.9)
A 		11
C 7.9
(-3)
A 		17.8
(3)
A 		9.7
(-1.9)
A 		14.3
(0.9)
A 		10
avr 7.6
(-3) 		9.7
(-0.9) 		10.6
(0.1) 		13.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.7
(3)
A 		2.6
(-1.9)
A 		1.4
(-2.9)
A 		4.3
(-0.6)
A 		4.9
(-0.1)
A 		1.3
(-3)
A 		7
B 2.3
(-2.7)
A 		4.1
(-1.8)
A 		1.6
(-3)
A 		2.3
(-2.7)
A 		13.7
(3)
A 		2.1
(-2.8)
A 		12
C 13
(3)
A 		6.2
(-0.3)
A 		2.2
(-2.3)
A 		1.8
(-2.5)
A 		6.3
(-0.3)
A 		0.8
(-3)
A 		12
avr 8
(2.7) 		4.3
(-0.5) 		1.7
(-2.7) 		2.8
(-1.8) 		8.3
(3) 		1.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3517
Sequence Type Exemplar sequence
Representative Public ID W09H1.3 NCBI
Target Description W09H1.3 /REP_DB=WormBase Gene ID /WP=CE16573 /TR=O45901 /GB=CAB04956.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064397 NCBI Caenorhabditis elegans W09H1.3 (W09H1.3) mRNA, complete cds. 11/11 A 
SNAP00000010987 ENSEMBL cdna:SNAP chromosome:CEL140:II:13184330:13184899:1 11/11 None
W09H1.3 ENSEMBL cdna:known chromosome:CEL140:II:13184330:13184899:1 gene:W09H1.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13184326-13184896(+) 92.14 100.0
Public Domain and Genome References
Gene Title
Ensembl W09H1.3
Entrez Gene 174962 Entrez gene
SwissProt O45901 EMBL-EBI
WormBase CE16573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04956 Hypothetical protein W09H1.3 [Caenorhabditis elegans] ref|NP_496798.1| W09H1.3 [Caenorhabditis elegans] 1.0E-53
blast CAB04226 Hypothetical protein F32A11.1 [Caenorhabditis elegans] ref|NP_496794.1| F32A11.1 [Caenorhabditis elegans] 3.0E-34
blast CAE59437 Hypothetical protein CBG02810 [Caenorhabditis briggsae] 1.0E-33
Sequence
Target Sequence 
>C. ELEGANS:178784_AT
cgtctgcgtcacgagagctggaattaaagggacgagtacgagaggtgcttcccagtggtg
aactccgcttggaacatgagccaattatgaagattccgttccttccaaagcgaaagaatg
tcgatacgggccttctgaatctgcggctggccggtgtagagctctctcaatctggacagc
aatttttggcgaaggatttgaggcacaccaataagcccgtcacttttaccgttattaaga
atgactgccatcgaaaaatttcaccacttccggtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCTGCGTCACGAGAGCTGGAATT 138 245 23 Antisense
TGCGTCACGAGAGCTGGAATTAAAG 341 499 27 Antisense
GACGAGTACGAGAGGTGCTTCCCAG 59 379 53 Antisense
AGAGGTGCTTCCCAGTGGTGAACTC 326 67 63 Antisense
CCAGTGGTGAACTCCGCTTGGAACA 217 271 74 Antisense
GTGAACTCCGCTTGGAACATGAGCC 52 483 80 Antisense
ACTCCGCTTGGAACATGAGCCAATT 520 99 84 Antisense
TGAGGCACACCAATAAGCCCGTCAC 509 567 221 Antisense
ACCGTTATTAAGAATGACTGCCATC 273 85 250 Antisense
TTAAGAATGACTGCCATCGAAAAAT 628 683 257 Antisense
GAAAAATTTCACCACTTCCGGTGAT 268 353 275 Antisense
Sequence Source Affymetrix Proprietary Database