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[178783_at]

Description T28F4.6 /REP_DB=WormBase Gene ID /WP=CE18299 /TR=Q22848 /GB=CAA96696.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 12.6
(-2.1)
A 		5.4
(-3)
A 		32.9
(0.4)
A 		54.5
(3)
A 		49
B 53.3
(3)
A 		46.9
(2.2)
A 		2.5
(-3)
A 		35.4
(0.9)
A 		51
C 39.5
(-2.1)
A 		26.7
(-3)
A 		31
(-2.7)
A 		113
(3)
A 		86
avr 35.1
(-1.3) 		26.3
(-2.4) 		22.1
(-3) 		67.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5.2
(-3)
A 		49.7
(3)
A 		14.8
(-1.7)
A 		31.6
(0.6)
A 		6.6
(-2.8)
A 		30.3
(0.4)
A 		45
B 33.9
(3)
A 		19.4
(0.3)
A 		19.9
(0.4)
A 		26
(1.5)
A 		7.1
(-2)
A 		1.8
(-3)
A 		32
C 33.6
(2.5)
A 		23.4
(0.7)
A 		36.7
(3)
A 		3.2
(-2.8)
A 		1.9
(-3)
A 		20.2
(0.2)
A 		35
avr 24.2
(1.5) 		30.8
(3) 		23.8
(1.4) 		20.3
(0.5) 		5.2
(-3) 		17.4
(-0.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.6
(-0.2)
A 		1.2
(-3)
A 		8.6
(3)
A 		8
(2.5)
A 		7
B 17
(3)
A 		11.6
(1)
A 		0.6
(-3)
A 		7.5
(-0.5)
A 		16
C 13.1
(-0.2)
A 		7.7
(-3)
A 		10.8
(-1.4)
A 		19.1
(3)
A 		11
avr 11.6
(3) 		6.8
(-2.9) 		6.7
(-3) 		11.5
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1
(-3)
A 		17.7
(3)
A 		3.2
(-2.2)
A 		8
(-0.5)
A 		2
(-2.6)
A 		7.4
(-0.7)
A 		17
B 11.8
(3)
A 		6.5
(0.1)
A 		4.8
(-0.8)
A 		6.9
(0.4)
A 		2.9
(-1.8)
A 		0.7
(-3)
A 		11
C 12.5
(3)
A 		7.1
(0.3)
A 		9.3
(1.4)
A 		0.6
(-3)
A 		0.6
(-3)
A 		6.7
(0.1)
A 		12
avr 8.4
(1.6) 		10.4
(3) 		5.8
(-0.2) 		5.2
(-0.6) 		1.8
(-3) 		4.9
(-0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.500
Sequence Type Exemplar sequence
Representative Public ID T28F4.6 NCBI
Target Description T28F4.6 /REP_DB=WormBase Gene ID /WP=CE18299 /TR=Q22848 /GB=CAA96696.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059702
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T28F4.6 ENSEMBL cdna:known chromosome:CEL140:I:7500916:7502828:-1 gene:T28F4.6 None
SNAP00000023979 ENSEMBL cdna:SNAP chromosome:CEL140:I:7500656:7502337:-1 None
NM_059702 NCBI Caenorhabditis elegans T28F4.6 (T28F4.6) mRNA, complete cds. None
GENEFINDER00000023985 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7501072:7502337:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7501675-7502268(-) 82.87 100.0
Public Domain and Genome References
Gene Title
Ensembl T28F4.6
Entrez Gene 3565863 Entrez gene
SwissProt Q22848 EMBL-EBI
WormBase CE37559 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96696 Hypothetical protein T28F4.6 [Caenorhabditis elegans] ref|NP_492103.2| T28F4.6 [Caenorhabditis elegans] 1.0E-136
blast CAA96696 Hypothetical protein T28F4.6 [Caenorhabditis elegans] ref|NP_492103.2| T28F4.6 [Caenorhabditis elegans] 1.0E-107
blast CAE66556 Hypothetical protein CBG11868 [Caenorhabditis briggsae] 3.0E-51
blast CAE66556 Hypothetical protein CBG11868 [Caenorhabditis briggsae] 4.0E-51
Sequence
Target Sequence 
>C. ELEGANS:178783_AT
aatggaggtgcgattccaccgaaaaagaggagaagtgttgcgaacgacgaatcaattcag
aacaagagatccaaagctgccgatacaagaaatgaatttgagaatgtcattgcaaaaata
aaagtagaagataaagatgtggcactgaaatctgcaaaaaagttgaaggcaatgcttcca
aatgaaacaaaaattggaagttttgtatcacataaaaagaatctagaggatttagtttcg
gtcttttctagagaaactagcttattgggcacttctatgtaccacgaggatcttcataaa
tccgttataagtatattggctaattgttgttgcatggacaagacgacttcgacaggaatg
cagattaaaaaagctcaacgaagttttctcgatcaagctggtaatattattgtttctcct
aaaaatgttacaaatcaaactttctatttttccgccaacaaaattccgatctcgacacag
caattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGAGGTGCGATTCCACCGAAAA 76 163 22 Antisense
GAAGTGTTGCGAACGACGAATCAAT 22 337 53 Antisense
GAGATCCAAAGCTGCCGATACAAGA 94 397 87 Antisense
GATTTAGTTTCGGTCTTTTCTAGAG 155 309 250 Antisense
GAAACTAGCTTATTGGGCACTTCTA 105 357 274 Antisense
GCACTTCTATGTACCACGAGGATCT 17 317 290 Antisense
ATTGGCTAATTGTTGTTGCATGGAC 374 3 336 Antisense
GTTGCATGGACAAGACGACTTCGAC 227 439 350 Antisense
GAAGTTTTCTCGATCAAGCTGGTAA 65 337 401 Antisense
TTTCCGCCAACAAAATTCCGATCTC 575 669 470 Antisense
TTCCGATCTCGACACAGCAATTTTT 249 697 485 Antisense
Sequence Source Affymetrix Proprietary Database