[Home] | [Total List]

[178782_at]

Description D1081.6 /REP_DB=WormBase Gene ID /WP=CE05538 /TR=Q18959 /GB=CAB00027.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      6grp_total > 67      4grp_total > 21      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 63.6
(-1.2)
P 		65.4
(-1.2)
P 		24.6
(-3)
A 		157.2
(3)
P 		133
B 76.4
(0.4)
P 		49.1
(-3)
A 		58.2
(-1.9)
M 		97.6
(3)
P 		49
C 93.3
(3)
P 		72.9
(0.8)
M 		38.7
(-3)
A 		41.5
(-2.7)
P 		55
avr 77.8
(0.8) 		62.5
(-0.7) 		40.5
(-3) 		98.8
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 96.5
(-0.2)
A 		51.6
(-3)
A 		73.5
(-1.6)
P 		72.2
(-1.7)
P 		51.1
(-3)
P 		149.7
(3)
P 		99
B 61.2
(-1.4)
P 		49.6
(-2.2)
A 		110.6
(1.9)
P 		37.7
(-3)
P 		70
(-0.8)
P 		127.8
(3)
P 		90
C 59
(-2.9)
P 		86.4
(-1.1)
P 		56.8
(-3)
M 		101
(-0.1)
P 		73.9
(-1.9)
P 		149.1
(3)
P 		92
avr 72.2
(-2.3) 		62.5
(-3) 		80.3
(-1.7) 		70.3
(-2.4) 		65
(-2.8) 		142.2
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 23.1
(3)
P 		14.2
(-0.2)
P 		6.4
(-3)
A 		23
(3)
P 		17
B 24.4
(3)
P 		12.1
(-3)
A 		13.5
(-2.3)
M 		20.8
(1.2)
P 		12
C 30.9
(3)
P 		20.9
(0.5)
M 		13.5
(-1.4)
A 		7
(-3)
P 		24
avr 26.1
(3) 		15.7
(-1.2) 		11.1
(-3) 		16.9
(-0.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 17.8
(-2.3)
A 		18.3
(-2.2)
A 		16
(-2.8)
P 		18.3
(-2.2)
P 		15.4
(-3)
P 		36.4
(3)
P 		21
B 21.3
(-1.2)
P 		16.5
(-2)
A 		26.9
(-0.3)
P 		10
(-3)
P 		28.5
(-0)
P 		47.6
(3)
P 		38
C 21.9
(-1.7)
P 		26.4
(-1)
P 		14.4
(-3)
M 		20.3
(-2)
P 		23.9
(-1.4)
P 		49.9
(3)
P 		36
avr 20.3
(-2.1) 		20.4
(-2.1) 		19.1
(-2.4) 		16.2
(-3) 		22.6
(-1.6) 		44.6
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178782_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.673
Sequence Type Exemplar sequence
Representative Public ID D1081.6 NCBI
Target Description D1081.6 /REP_DB=WormBase Gene ID /WP=CE05538 /TR=Q18959 /GB=CAB00027.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059899 NCBI Caenorhabditis elegans D1081.6 (D1081.6) mRNA, complete cds. 11/11 None
SNAP00000043200 ENSEMBL cdna:SNAP chromosome:CEL140:I:8492844:8493819:-1 11/11 None
GENEFINDER00000043207 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8492844:8493819:-1 11/11 None
D1081.6 ENSEMBL cdna:known chromosome:CEL140:I:8492832:8493819:-1 gene:D1081.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8492774-8493750(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1081.6
Entrez Gene 183930 Entrez gene
SwissProt Q18959 EMBL-EBI
WormBase CE05538 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00027 Hypothetical protein D1081.6 [Caenorhabditis elegans] ref|NP_492300.1| D1081.6 [Caenorhabditis elegans] 7.0E-99
blast CAE67121 Hypothetical protein CBG12535 [Caenorhabditis briggsae] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:178782_AT
aaattgcgaaactcctacttcttctttgtcaacgtctcttcgatttgtaccgtctctcgc
atgtattgctgaagaagagccaaaagtaatcggaatccgaaaaataaccgttcccggatc
ttcgaaaccgttccaagtgcaaataccactctacgatttgaatatatatgcccctgaacc
accgaaacagccacttccggacagttaccaacgattgcttgcagaaatggatcaatatat
cggaggtcatcagaattcggagatgtataaagaaatggccaaaaatctacgacacaaagt
tgcagtggaacaagcagaaaataatcgactttcgaaatcaaacttcacaaatcgagattg
gtactggtatgctgaacaaacgagagcctttgtagatgagcctgtgatcaattctaccag
caaaactcaagaatccaacatttctgagtgcttggaagaaacctcatcttctgcaaaaag
ta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCGAAACTCCTACTTCTTCT 266 115 21 Antisense
AACGTCTCTTCGATTTGTACCGTCT 169 145 51 Antisense
TACCGTCTCTCGCATGTATTGCTGA 73 651 68 Antisense
GGATCTTCGAAACCGTTCCAAGTGC 182 509 136 Antisense
TGAATATATATGCCCCTGAACCACC 685 575 179 Antisense
ACAGTTACCAACGATTGCTTGCAGA 586 107 221 Antisense
ATCGGAGGTCATCAGAATTCGGAGA 669 31 259 Antisense
CGAGAGCCTTTGTAGATGAGCCTGT 569 249 401 Antisense
GATGAGCCTGTGATCAATTCTACCA 17 413 415 Antisense
GAATCCAACATTTCTGAGTGCTTGG 619 329 451 Antisense
GAAACCTCATCTTCTGCAAAAAGTA 9 359 478 Antisense
Sequence Source Affymetrix Proprietary Database