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[178781_at]

Description R07A4.4 /REP_DB=WormBase Gene ID /WP=CE03533 /TR=Q21782 /GB=CAA91764.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 38
(-3)
A 		127.8
(1.8)
A 		149.4
(3)
A 		59.5
(-1.8)
A 		111
B 33.5
(-3)
A 		121.3
(3)
A 		87.3
(0.7)
A 		58.7
(-1.3)
A 		88
C 52
(-3)
A 		127
(3)
A 		113.1
(1.9)
A 		127.2
(3)
A 		75
avr 41.2
(-3) 		125.4
(3) 		116.6
(2.4) 		81.8
(-0.1) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 16.4
(-3)
A 		113.1
(3)
A 		84.4
(1.2)
A 		92.9
(1.7)
A 		101.1
(2.3)
A 		69.7
(0.3)
A 		97
B 46.3
(-2.3)
A 		99.3
(1.1)
A 		128.5
(3)
A 		90.9
(0.6)
A 		75.5
(-0.4)
A 		35
(-3)
A 		94
C 16.8
(-3)
A 		91.6
(1)
A 		92
(1.1)
A 		127.9
(3)
A 		88.9
(0.9)
A 		43.9
(-1.5)
A 		111
avr 26.5
(-3) 		101.3
(2.8) 		101.6
(2.8) 		103.9
(3) 		88.5
(1.8) 		49.5
(-1.2) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 13.8
(-2)
A 		27.7
(0.8)
A 		39.1
(3)
A 		8.7
(-3)
A 		30
B 10.7
(-3)
A 		29.9
(3)
A 		20.2
(-0)
A 		12.5
(-2.4)
A 		19
C 17.2
(-3)
A 		36.5
(2.2)
A 		39.4
(3)
A 		21.4
(-1.9)
A 		22
avr 13.9
(-3) 		31.4
(2.5) 		32.9
(3) 		14.2
(-2.9) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3
(-3)
A 		40.2
(3)
A 		18.4
(-0.5)
A 		23.6
(0.3)
A 		30.5
(1.4)
A 		17
(-0.7)
A 		37
B 16.1
(-2.1)
A 		33.1
(3)
A 		31.2
(2.4)
A 		24.1
(0.3)
A 		30.7
(2.3)
A 		13.1
(-3)
A 		20
C 6.2
(-3)
A 		28
(2.8)
A 		23.4
(1.6)
A 		25.7
(2.2)
A 		28.8
(3)
A 		14.7
(-0.7)
A 		23
avr 8.4
(-3) 		33.8
(3) 		24.3
(0.8) 		24.5
(0.8) 		30
(2.1) 		14.9
(-1.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17053
Sequence Type Exemplar sequence
Representative Public ID R07A4.4 NCBI
Target Description R07A4.4 /REP_DB=WormBase Gene ID /WP=CE03533 /TR=Q21782 /GB=CAA91764.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077396(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077396 NCBI Caenorhabditis elegans R07A4.4 (R07A4.4) mRNA, complete cds. 10/11 None
R07A4.4 ENSEMBL cdna:known chromosome:CEL140:X:10751835:10754702:-1 gene:R07A4.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024560 7/11 Cross Hyb Matching Probes None
SNAP00000024558 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10751834-10754702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07A4.4
Entrez Gene 187644 Entrez gene
SwissProt Q21782 EMBL-EBI
WormBase CE37398 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91764 Hypothetical protein R07A4.4 [Caenorhabditis elegans] ref|NP_509797.2| R07A4.4 [Caenorhabditis elegans] 0.0
blast CAE70942 Hypothetical protein CBG17597 [Caenorhabditis briggsae] 1.0E-169
blast AAA81055 Hypothetical protein F52C9.5 [Caenorhabditis elegans] 4.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 4.3E-20
Pfam IPR003014 EMBL-EBI N/apple PAN 3.1E-18
Sequence
Target Sequence 
>C. ELEGANS:178781_AT
gggcatgcatccgaagtgatttcagttgccagtgagaatgaatgcgtcttggagtgtata
aaagcgaagacactccgttctgtggcatgccactcgattctgcactatccggacttttca
tcactcaactgcattcttaatgttcacaccagacacacaaaaaaccagtatttcacgccg
gaactagcttataaagtggattatgtcgaacttggttcatgtgtgactagtgcagcatca
gggcaacttgccagtagagcgatgatccctcccaacccattcaacaaaccggctgtagca
gctgacaatcaagttggtgttggatcagtgacgtccgaatggactgaatggacacattgt
gatgagaagacaagtacgagaagccgacaaagagtttgcaatggttgcaatgaaattata
caggtgttaatcattaaaaaattcatgccgtgtttctcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCATGCATCCGAAGTGATTTCAG 287 493 451 Antisense
AAAGCGAAGACACTCCGTTCTGTGG 337 125 511 Antisense
GTTCTGTGGCATGCCACTCGATTCT 106 443 527 Antisense
GCATTCTTAATGTTCACACCAGACA 536 307 581 Antisense
TTTCACGCCGGAACTAGCTTATAAA 705 671 621 Antisense
GGTTCATGTGTGACTAGTGCAGCAT 330 507 664 Antisense
AGTGCAGCATCAGGGCAACTTGCCA 148 59 679 Antisense
TGCCAGTAGAGCGATGATCCCTCCC 692 575 699 Antisense
CAACCCATTCAACAAACCGGCTGTA 666 183 723 Antisense
GGTGTTGGATCAGTGACGTCCGAAT 664 499 766 Antisense
AAAAATTCATGCCGTGTTTCTCGTC 550 129 887 Antisense
Sequence Source Affymetrix Proprietary Database