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[178780_at]

Description C54C8.3 /REP_DB=WormBase Gene ID /WP=CE24864 /TR=O02231 /GB=CAB05465.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 3.2
(-3)
A 		50.1
(3)
A 		5.1
(-2.8)
A 		45.9
(2.5)
A 		47
B 3.7
(-3)
A 		29.2
(1.3)
A 		39.6
(3)
A 		6.5
(-2.5)
A 		36
C 2.6
(-2.8)
A 		12.8
(3)
A 		2.3
(-3)
A 		5.1
(-1.4)
A 		11
avr 3.2
(-3) 		30.7
(3) 		15.7
(-0.3) 		19.2
(0.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 49.3
(3)
A 		1.9
(-3)
A 		6.4
(-2.4)
A 		7.7
(-2.3)
A 		25.2
(-0.1)
A 		3.7
(-2.8)
A 		47
B 6.5
(-1.4)
A 		19.8
(3)
A 		2.4
(-2.8)
A 		6.4
(-1.4)
A 		4.8
(-2)
A 		1.7
(-3)
A 		18
C 3
(-3)
A 		23.3
(3)
A 		14.2
(0.3)
A 		7.6
(-1.6)
A 		5.2
(-2.3)
A 		5.7
(-2.2)
A 		20
avr 19.6
(3) 		15
(1.3) 		7.7
(-1.5) 		7.2
(-1.7) 		11.7
(0) 		3.7
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-3)
A 		10.9
(3)
A 		1.3
(-2.9)
A 		6.7
(0.4)
A 		10
B 1.2
(-3)
A 		7.2
(1.5)
A 		9.2
(3)
A 		1.4
(-2.9)
A 		8
C 0.9
(-2.8)
A 		3.7
(3)
A 		0.8
(-3)
A 		0.9
(-2.8)
A 		3
avr 1.1
(-3) 		7.3
(3) 		3.8
(-0.4) 		3
(-1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.1
(3)
A 		0.7
(-3)
A 		1.4
(-2.5)
A 		2
(-2.1)
A 		7.6
(1.9)
A 		0.9
(-2.9)
A 		8
B 2.2
(-1.4)
A 		6.6
(3)
A 		0.6
(-3)
A 		1.7
(-1.9)
A 		2
(-1.6)
A 		0.6
(-3)
A 		6
C 1.1
(-3)
A 		7.1
(3)
A 		3.6
(-0.5)
A 		1.5
(-2.6)
A 		1.7
(-2.4)
A 		1.9
(-2.2)
A 		6
avr 4.1
(1.9) 		4.8
(3) 		1.9
(-1.7) 		1.7
(-2) 		3.8
(1.4) 		1.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2383
Sequence Type Exemplar sequence
Representative Public ID C54C8.3 NCBI
Target Description C54C8.3 /REP_DB=WormBase Gene ID /WP=CE24864 /TR=O02231 /GB=CAB05465.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060757 NCBI Caenorhabditis elegans C54C8.3 (C54C8.3) mRNA, complete cds. 11/11 None
SNAP00000034207 ENSEMBL cdna:SNAP chromosome:CEL140:I:12455288:12457007:-1 11/11 None
GENEFINDER00000034217 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12455288:12458320:-1 11/11 None
C54C8.3 ENSEMBL cdna:known chromosome:CEL140:I:12455288:12456542:-1 gene:C54C8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12455218-12456313(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54C8.3
Entrez Gene 183770 Entrez gene
SwissProt O02231 EMBL-EBI
WormBase CE36473 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05465 Hypothetical protein C54C8.3 [Caenorhabditis elegans] ref|NP_493158.2| C54C8.3 [Caenorhabditis elegans] 0.0
blast CAB05465 Hypothetical protein C54C8.3 [Caenorhabditis elegans] ref|NP_493158.2| C54C8.3 [Caenorhabditis elegans] 1.0E-178
blast CAB04032 Hypothetical protein E03H4.11 [Caenorhabditis elegans] ref|NP_493153.1| E03H4.11 [Caenorhabditis elegans] 1.0E-149
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 3.6E-114
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 3.6E-114
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 3.6E-114
Sequence
Target Sequence 
>C. ELEGANS:178780_AT
gttggattgacgcccggtgaatataaaatgaagaaaatggtcatgcaagaggcaaagctc
tacggggacattatcgtcgttgacatgaatgataattacgaagagctcacctataagtcg
ctggcgatccttctctacggagtcagcaaagctccacggtaccagatgattgggaaaatc
gacgaagacgtcatgttcttcccggataagcttacagagctctacgatcaaggtttcata
gatgccactccacttagaatttacggtttaaaaatgcagtccggagctaacattttccgt
gacaagacacatcgatggtatgtcccggagtcttcctactcttgctccaaattccccgag
tatgtctcgggaatgttgtatatggtcacttgggaggctgctcagcagatcatcaagtct
accaagtatcgagattttattcaagtagaagacgtatttctcactggaattctcgcggag
gaccttggaatttctgtcaaaaacttgccggaattctacaagtaccctagtgacatcgaa
gaatccaatccaggagacgtaatagcatggcacaccgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGATTGACGCCCGGTGAATATA 56 437 247 Antisense
AGAGCTCACCTATAAGTCGCTGGCG 704 67 348 Antisense
GCAAAGCTCCACGGTACCAGATGAT 616 315 392 Antisense
GACGAAGACGTCATGTTCTTCCCGG 660 379 427 Antisense
AGAGCTCTACGATCAAGGTTTCATA 651 69 462 Antisense
TTTCATAGATGCCACTCCACTTAGA 60 673 480 Antisense
GAGCTAACATTTTCCGTGACAAGAC 709 387 530 Antisense
ACACATCGATGGTATGTCCCGGAGT 563 109 553 Antisense
GACGTATTTCTCACTGGAATTCTCG 365 377 697 Antisense
GAATTCTCGCGGAGGACCTTGGAAT 152 323 713 Antisense
GACGTAATAGCATGGCACACCGACA 216 375 802 Antisense
Sequence Source Affymetrix Proprietary Database