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[178779_at] G-protein coupled receptor, srv family

Description F53F1.7 /REP_DB=WormBase Gene ID /WP=CE10944 /TR=P91999 /GB=CAB03129.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 13      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 56.1
(3)
A 		5.8
(-2.8)
A 		3.7
(-3)
A 		50.8
(2.4)
A 		52
B 39.3
(1.9)
A 		2.2
(-3)
A 		17.2
(-1)
A 		47.9
(3)
P 		46
C 52.3
(-1.7)
A 		36.5
(-2.3)
A 		19.5
(-3)
A 		166.1
(3)
P 		147
avr 49.2
(-0.1) 		14.8
(-2.9) 		13.5
(-3) 		88.3
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 21.9
(-2.2)
A 		29.1
(-1.6)
A 		86.8
(3)
P 		35.2
(-1.1)
A 		55.9
(0.5)
A 		11.5
(-3)
A 		75
B 16.6
(-1.8)
A 		31.4
(1.8)
A 		36.3
(3)
A 		35.2
(2.7)
A 		33.1
(2.2)
A 		11.7
(-3)
A 		25
C 4.2
(-3)
A 		38.6
(3)
P 		16.7
(-0.8)
A 		33.9
(2.2)
A 		19.3
(-0.4)
A 		10.6
(-1.9)
A 		34
avr 14.2
(-2.5) 		33
(0.7) 		46.6
(3) 		34.8
(1) 		36.1
(1.2) 		11.3
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 20.4
(3)
A 		1.3
(-2.9)
A 		1
(-3)
A 		7.4
(-1)
A 		19
B 12.5
(3)
A 		0.5
(-3)
A 		4
(-1.3)
A 		10.2
(1.9)
P 		12
C 17.3
(-0)
A 		10.5
(-2)
A 		6.8
(-3)
A 		28
(3)
P 		21
avr 16.7
(3) 		4.1
(-2.9) 		3.9
(-3) 		15.2
(2.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4
(-2.6)
A 		10.3
(-0.2)
A 		18.9
(3)
P 		8.9
(-0.7)
A 		16.9
(2.3)
A 		2.8
(-3)
A 		16
B 5.8
(-2.1)
A 		10.5
(1)
A 		8.8
(-0.1)
A 		9.3
(0.2)
A 		13.5
(3)
A 		4.4
(-3)
A 		9
C 1.6
(-3)
A 		11.8
(3)
P 		4.3
(-1.4)
A 		6.8
(0.1)
A 		6.3
(-0.2)
A 		3.6
(-1.8)
A 		10
avr 3.8
(-2.9) 		10.9
(2.1) 		10.7
(2) 		8.3
(0.3) 		12.2
(3) 		3.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12813
Sequence Type Exemplar sequence
Representative Public ID F53F1.7 NCBI
Target Description F53F1.7 /REP_DB=WormBase Gene ID /WP=CE10944 /TR=P91999 /GB=CAB03129.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073926(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073926 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-8) (srv-8) mRNA, complete cds. 9/11 None
GENEFINDER00000038195 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13421808:13423331:-1 9/11 None
F53F1.7 ENSEMBL cdna:known chromosome:CEL140:V:13421808:13423331:-1 gene:F53F1.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13421587-13423331(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-8
Ensembl F53F1.7
Entrez Gene 186171 Entrez gene
SwissProt P91999 EMBL-EBI
WormBase CE33106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03129 Hypothetical protein F53F1.7 [Caenorhabditis elegans] ref|NP_506327.2| Serpentine Receptor, class V family member (srv-8) [Caenorhabditis elegans] 1.0E-179
blast CAE62599 Hypothetical protein CBG06714 [Caenorhabditis briggsae] 1.0E-147
blast CAB03130 Hypothetical protein F53F1.8 [Caenorhabditis elegans] ref|NP_506328.2| Serpentine Receptor, class V family member (srv-9) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506327.2 8 15-37,57-79,83-105,112-131,141-159,188-210,247-269,276-298
F53F1.7 8 15-37,57-79,83-105,112-131,141-159,188-210,247-269,276-298
GENEFINDER00000038195 8 15-37,57-79,83-105,112-131,141-159,188-210,247-269,276-298
Sequence
Target Sequence 
>C. ELEGANS:178779_AT
ggtggccggatccaaatatcttgacagtagagaaaaacagaaaaaagagagcagcctgga
caaaatgaccgctatagtttgtagtctcgaacttatttattttgcatttgttgtgtactc
tctccaaataaatcaaacgatgaacaagagagttttctattttctctataatattctttg
tgtcatctattcaacctattcagcgtggatgttacttttgttttcaagaccaataactgt
gcagtttaagcagagatttttgtacgctttacactataattcccaaaaaaaaacaatatg
tatttcagaaggcttagctcaaaacgatcaactcgttctatttcaatttcagtccaagga
ggcagccgggaaaataacaacaaatgaaaagaaatcaaattcaattgacttttttgttga
atgcttgtcggctcttatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGCCGGATCCAAATATCTTGAC 659 497 687 Antisense
AGAGCAGCCTGGACAAAATGACCGC 593 69 734 Antisense
TGACCGCTATAGTTTGTAGTCTCGA 80 571 752 Antisense
TTTGCATTTGTTGTGTACTCTCTCC 128 669 787 Antisense
GTGTCATCTATTCAACCTATTCAGC 373 487 866 Antisense
CAGCGTGGATGTTACTTTTGTTTTC 314 203 887 Antisense
GTACGCTTTACACTATAATTCCCAA 252 457 948 Antisense
GGCTTAGCTCAAAACGATCAACTCG 667 537 997 Antisense
CTCGTTCTATTTCAATTTCAGTCCA 637 231 1018 Antisense
TTTCAGTCCAAGGAGGCAGCCGGGA 97 673 1033 Antisense
GTTGAATGCTTGTCGGCTCTTATCT 164 439 1102 Antisense
Sequence Source Affymetrix Proprietary Database