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[178778_s_at]

Description T13H5.6 /REP_DB=WormBase Gene ID /WP=CE23982 /TR=Q9U369 /GB=CAB54303.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 53      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 507
(3)
P 		472.5
(2.2)
P 		313.5
(-1.3)
P 		236.3
(-3)
P 		271
B 491.7
(3)
P 		466.7
(2.6)
P 		363.1
(0.9)
P 		116.3
(-3)
P 		375
C 519.1
(3)
P 		462.1
(2.1)
P 		388.3
(0.9)
P 		140.1
(-3)
P 		379
avr 505.9
(3) 		467.1
(2.3) 		355
(0.4) 		164.2
(-3) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 455
1 2 3 4 5 6 range
A 465.7
(1.2)
P 		405.3
(0.4)
P 		568.5
(2.7)
P 		589.8
(3)
P 		491.3
(1.6)
P 		169.7
(-3)
P 		420
B 504.7
(1.8)
P 		391.3
(0.1)
P 		424.7
(0.6)
P 		589.7
(3)
P 		481.1
(1.4)
P 		178.2
(-3)
P 		412
C 432.7
(0.3)
P 		427.7
(0.3)
P 		509.7
(1.4)
P 		624.2
(3)
P 		357.8
(-0.7)
P 		194
(-3)
P 		430
avr 467.7
(1.1) 		408.1
(0.2) 		501
(1.6) 		601.2
(3) 		443.4
(0.7) 		180.6
(-3) 		421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 184.6
(3)
P 		102.6
(-0.3)
P 		82
(-1.1)
P 		34.6
(-3)
P 		150
B 156.8
(3)
P 		115.3
(1.1)
P 		84.2
(-0.3)
P 		24.8
(-3)
P 		132
C 171.8
(3)
P 		132.9
(1.4)
P 		135.3
(1.5)
P 		23.6
(-3)
P 		148
avr 171.1
(3) 		116.9
(0.7) 		100.5
(0) 		27.7
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 85.8
(-0.5)
P 		144.2
(2.7)
P 		123.8
(1.6)
P 		149.6
(3)
P 		148.3
(2.9)
P 		41.3
(-3)
P 		108
B 175.6
(2.1)
P 		130.2
(-0)
P 		103.1
(-1.3)
P 		156.2
(1.2)
P 		195.5
(3)
P 		66.4
(-3)
P 		129
C 160.4
(3)
P 		130.5
(1.1)
P 		129.7
(1.1)
P 		125.5
(0.8)
P 		115.8
(0.2)
P 		64.9
(-3)
P 		96
avr 140.6
(2.2) 		135
(1.9) 		118.9
(0.8) 		143.8
(2.4) 		153.2
(3) 		57.5
(-3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178778_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3375
Sequence Type Exemplar sequence
Representative Public ID T13H5.6 NCBI
Target Description T13H5.6 /REP_DB=WormBase Gene ID /WP=CE23982 /TR=Q9U369 /GB=CAB54303.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063400 NCBI Caenorhabditis elegans T13H5.6 (T13H5.6) mRNA, complete cds. 11/11 None
SNAP00000035146 ENSEMBL cdna:SNAP chromosome:CEL140:II:8526832:8528659:-1 11/11 None
GENEFINDER00000035154 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8526832:8528597:-1 11/11 None
T13H5.6 ENSEMBL cdna:known chromosome:CEL140:II:8526725:8531144:-1 gene:T13H5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8526828-8531093(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13H5.6
Entrez Gene 174365 Entrez gene
SwissProt Q9U369 EMBL-EBI
WormBase CE23982 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54303 Hypothetical protein T13H5.6 [Caenorhabditis elegans] ref|NP_495801.1| T13H5.6 [Caenorhabditis elegans] 0.0
blast CAE61008 Hypothetical protein CBG04746 [Caenorhabditis briggsae] 0.0
blast CAE61008 Hypothetical protein CBG04746 [Caenorhabditis briggsae] 1.0E-178
blast CAE61008 Hypothetical protein CBG04746 [Caenorhabditis briggsae] 1.0E-177
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495801.1 4 5-24,28-50,62-84,137-159
T13H5.6 4 5-24,28-50,62-84,137-159
SNAP00000035146 2 30-52,105-127
GENEFINDER00000035154 2 47-69,122-144
Sequence
Target Sequence 
>C. ELEGANS:178778_S_AT
atgtcacatcattagtcagcttcgacccaaaaagtgcgactcttttgcgaatacgtcagc
atttggaggcagagccatctgatagagatacgccagactacgatatgtacgaacgactcc
gatcaagatcttctggacactctgaagttgcaccggcttctactatccctttgagttctg
actataaatcaagaaatgcttctcaagattcggttccttcaatgtttgctccgatgctca
actctccagccccatcttctacaacttctggatcttcttctagaacatctggagcttcgt
tggcacacaaaactcacattgttgggaaaggtggaatttcgttatcaactgttgatccat
ccccgattctttctccaggaatacggttatcggagcaactaggagccaagaatcagtctt
ataaaagtgcattcagggtccagaaaactgaaaatgctcgtgttataagtcactatcacg
ctcccaacgaaattccactttccagtgatccatcggttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCACATCATTAGTCAGCTTCGA 652 47 869 Antisense
GTGCGACTCTTTTGCGAATACGTCA 504 479 902 Antisense
TACGAACGACTCCGATCAAGATCTT 153 647 976 Antisense
TCTGGACACTCTGAAGTTGCACCGG 377 607 1000 Antisense
TCTACTATCCCTTTGAGTTCTGACT 144 615 1027 Antisense
GCTTCTCAAGATTCGGTTCCTTCAA 246 305 1066 Antisense
TCAATGTTTGCTCCGATGCTCAACT 504 633 1087 Antisense
ATCTTCTACAACTTCTGGATCTTCT 421 31 1122 Antisense
ATCTGGAGCTTCGTTGGCACACAAA 555 33 1155 Antisense
TTATCAACTGTTGATCCATCCCCGA 407 679 1210 Antisense
CACTTTCCAGTGATCCATCGGTTGT 593 197 1364 Antisense
Sequence Source Affymetrix Proprietary Database