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[178777_s_at]

Description D2085.5 /REP_DB=WormBase Gene ID /WP=CE05546 /TR=Q18431 /GB=CAA91065.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 74      6grp_total > 19      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 533
1 2 3 4 range
A 660.7
(3)
P 		307.1
(-2.3)
P 		321
(-2.1)
P 		259.8
(-3)
P 		401
B 489.9
(0.3)
P 		669
(3)
P 		274.7
(-3)
P 		317
(-2.4)
P 		394
C 502.1
(0.1)
P 		761.1
(3)
P 		435
(-0.7)
P 		228.3
(-3)
P 		533
avr 550.9
(2.5) 		579.1
(3) 		343.6
(-1.5) 		268.4
(-3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 830
1 2 3 4 5 6 range
A 569.1
(-2.8)
P 		602.9
(-2.5)
P 		591.2
(-2.6)
P 		805.2
(-0.5)
P 		1150.7
(3)
P 		551.2
(-3)
P 		600
B 883.9
(1.7)
P 		743.9
(0.5)
P 		321.2
(-3)
P 		1040.7
(3)
P 		910.5
(1.9)
P 		656
(-0.2)
P 		720
C 1133.9
(3)
P 		570.1
(-1.7)
P 		669.1
(-0.8)
P 		516
(-2.1)
P 		786.6
(0.1)
P 		407.4
(-3)
P 		727
avr 862.3
(1.8) 		639
(-1.4) 		527.2
(-3) 		787.3
(0.7) 		949.3
(3) 		538.2
(-2.8) 		422
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 240.6
(3)
P 		66.7
(-2.2)
P 		83.9
(-1.6)
P 		38
(-3)
P 		203
B 156.2
(2.5)
P 		165.2
(3)
P 		63.6
(-3)
P 		67.6
(-2.8)
P 		102
C 166.2
(1.2)
P 		218.8
(3)
P 		151.6
(0.8)
P 		38.5
(-3)
P 		180
avr 187.7
(3) 		150.2
(1.4) 		99.7
(-0.8) 		48
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 104.9
(-3)
P 		214.4
(-0.3)
P 		128.7
(-2.4)
P 		204.2
(-0.5)
P 		347.2
(3)
P 		134.2
(-2.3)
P 		242
B 307.5
(1.7)
P 		247.6
(0.5)
P 		78
(-3)
P 		275.6
(1.1)
P 		369.9
(3)
P 		244.6
(0.4)
P 		292
C 420.3
(3)
P 		173.9
(-1.7)
P 		170.3
(-1.7)
P 		103.8
(-3)
P 		254.5
(-0.1)
P 		136.4
(-2.4)
P 		317
avr 277.6
(1.6) 		212
(-0.4) 		125.7
(-3) 		194.5
(-0.9) 		323.9
(3) 		171.7
(-1.6) 		198
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178777_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2984
Sequence Type Exemplar sequence
Representative Public ID D2085.5 NCBI
Target Description D2085.5 /REP_DB=WormBase Gene ID /WP=CE05546 /TR=Q18431 /GB=CAA91065.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026884(11), NM_001026883(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026884 NCBI Caenorhabditis elegans D2085.5b (D2085.5) mRNA, complete cds. 11/11 None
NM_001026883 NCBI Caenorhabditis elegans D2085.5a (D2085.5) mRNA, complete cds. 11/11 None
SNAP00000003893 ENSEMBL cdna:SNAP chromosome:CEL140:II:8659798:8672128:-1 11/11 None
GENEFINDER00000003900 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8669276:8671680:-1 11/11 None
D2085.5b.1 ENSEMBL cdna:known chromosome:CEL140:II:8669066:8677167:-1 gene:D2085.5 11/11 A 
D2085.5b.2 ENSEMBL cdna:known chromosome:CEL140:II:8669066:8674932:-1 gene:D2085.5 11/11 A 
D2085.5b.3 ENSEMBL cdna:known chromosome:CEL140:II:8669066:8676793:-1 gene:D2085.5 11/11 A 
D2085.5a ENSEMBL cdna:known chromosome:CEL140:II:8669276:8677192:-1 gene:D2085.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8669272-8677189(-) 100.0 100.0
Public Domain and Genome References
Ensembl D2085.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91265 Hypothetical protein D2085.5a [Caenorhabditis elegans] emb|CAA91065.2| Hypothetical protein D2085.5a [Caenorhabditis elegans] ref|NP_001022054.1| D2085.5a [Caenorhabditis elegans] 0.0
blast CAE17686 Hypothetical protein D2085.5b [Caenorhabditis elegans] emb|CAE17775.1| Hypothetical protein D2085.5b [Caenorhabditis elegans] ref|NP_001022055.1| D2085.5b [Caenorhabditis elegans] 0.0
blast CAE65949 Hypothetical protein CBG11128 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001296 EMBL-EBI Glycosyl transferase, group 1 3.2E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000003893 2 7-29,876-898
Sequence
Target Sequence 
>C. ELEGANS:178777_S_AT
aatcatttgacagtacccacacggacaacgggatgatgctaaatgctcgaaggctcgggg
aaaagagtccatcgaatttaagtgatcgagattttcgtccatatgcaggtggtgggtcta
gtatggggcacggatcggttggaagaagaactggagcacttaagatcatgctggtatggc
tcgagaggccggaggacatgactagtttcccgatttatgaactaatcggaacttgcgatg
atggaaccgatttgctgaatggcggagctcaaaagccagaaattggtggagcaaccaaca
gtcaagttgcccatcacataattttcatccatttggtagaacctggaattgttcaaatca
ggacacgtggcactgtaaatagattcggagaggcaggaccacttgttgacggagtcgttg
tttcattggcaaaccttccatctttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCATTTGACAGTACCCACACGGA 201 169 2777 Antisense
GATGCTAAATGCTCGAAGGCTCGGG 9 413 2811 Antisense
CGAGATTTTCGTCCATATGCAGGTG 234 251 2863 Antisense
GCAGGTGGTGGGTCTAGTATGGGGC 436 309 2881 Antisense
GTATGGGGCACGGATCGGTTGGAAG 627 453 2897 Antisense
GTATGGCTCGAGAGGCCGGAGGACA 380 453 2950 Antisense
GGAGGACATGACTAGTTTCCCGATT 661 515 2967 Antisense
GTTGCCCATCACATAATTTTCATCC 53 441 3082 Antisense
GAGAGGCAGGACCACTTGTTGACGG 653 393 3164 Antisense
GACGGAGTCGTTGTTTCATTGGCAA 519 375 3184 Antisense
TCATTGGCAAACCTTCCATCTTTCA 250 619 3199 Antisense
Sequence Source Affymetrix Proprietary Database