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[178775_at]

Description C01G6.3 /REP_DB=WormBase Gene ID /WP=CE00865 /TR=Q17572 /GB=CAA84634.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 10.1
(-2.6)
A 		4.9
(-3)
A 		70.8
(1.5)
A 		92
(3)
A 		87
B 7.7
(-3)
A 		13.6
(-2.7)
A 		17.9
(-2.4)
A 		116.9
(3)
A 		109
C 24.9
(-2.5)
A 		7.9
(-3)
A 		24.7
(-2.5)
A 		196.2
(3)
A 		188
avr 14.2
(-2.7) 		8.8
(-3) 		37.8
(-1.6) 		135
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2542
1 2 3 4 5 6 range
A 260.3
(-2.4)
A 		77.5
(-2.8)
A 		9.2
(-3)
A 		4.9
(-3)
A 		502.6
(-1.8)
P 		2546.7
(3)
P 		2542
B 259.7
(-2.4)
P 		89
(-2.8)
A 		10.2
(-3)
A 		45.2
(-2.9)
A 		518
(-1.8)
P 		2484.6
(3)
P 		2474
C 241.2
(-2.5)
P 		67
(-2.9)
A 		39.2
(-2.9)
A 		13.9
(-3)
A 		485
(-1.9)
P 		2524.6
(3)
P 		2511
avr 253.7
(-2.4) 		77.8
(-2.9) 		19.5
(-3) 		21.3
(-3) 		501.9
(-1.8) 		2518.6
(3) 		2499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.7
(-2.1)
A 		1.1
(-3)
A 		18.5
(3)
A 		13.5
(1.3)
A 		17
B 2.5
(-3)
A 		3.4
(-2.8)
A 		4.1
(-2.6)
A 		24.9
(3)
A 		22
C 8.3
(-1.8)
A 		2.3
(-3)
A 		8.6
(-1.8)
A 		33.1
(3)
A 		31
avr 4.8
(-2.3) 		2.3
(-3) 		10.4
(-0.7) 		23.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 925
1 2 3 4 5 6 range
A 48
(-2.5)
A 		27.6
(-2.7)
A 		2
(-3)
A 		1.2
(-3)
A 		151.7
(-1.5)
P 		620
(3)
P 		619
B 90.4
(-2.4)
P 		29.6
(-2.8)
A 		2.5
(-3)
A 		12
(-2.9)
A 		210.5
(-1.6)
P 		926.5
(3)
P 		924
C 89.4
(-2.4)
P 		20.4
(-2.9)
A 		10
(-2.9)
A 		2.8
(-3)
A 		156.9
(-1.9)
P 		845.1
(3)
P 		842
avr 75.9
(-2.5) 		25.9
(-2.8) 		4.8
(-3) 		5.3
(-3) 		173
(-1.7) 		797.2
(3) 		792
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3557
Sequence Type Exemplar sequence
Representative Public ID C01G6.3 NCBI
Target Description C01G6.3 /REP_DB=WormBase Gene ID /WP=CE00865 /TR=Q17572 /GB=CAA84634.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063574 NCBI Caenorhabditis elegans C01G6.3 (C01G6.3) mRNA, complete cds. 11/11 None
SNAP00000013216 ENSEMBL cdna:SNAP chromosome:CEL140:II:9269805:9271063:1 11/11 None
GENEFINDER00000013244 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9269805:9271063:1 11/11 None
C01G6.3 ENSEMBL cdna:known chromosome:CEL140:II:9269805:9271178:1 gene:C01G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9269421-9271060(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G6.3
Entrez Gene 174469 Entrez gene
SwissProt Q17572 EMBL-EBI
WormBase CE37474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84634 Hypothetical protein C01G6.3 [Caenorhabditis elegans] ref|NP_495975.2| C01G6.3 [Caenorhabditis elegans] 0.0
blast CAE57877 Hypothetical protein CBG00919 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178775_AT
ggaactatttatgcgttggcccatggaggagagttcttgcacaatgaggaggtctatgcc
tattatgatattccacaattcgtcctgatcactcaacaagctgtaatcccaattgagctt
gaaaaatgcaaagttttgttcggcacgtacatttactgcttcgaagaatttgacacccaa
tgcgacgttcgtactctctcggattgcccaatttacgcctacaagaccgaagatgagttt
gtcttccgcagaagcttcggaatcggatatatttacgctacgaccgagtctgatgttgat
ttgtatcaaaatggcacaaaatcaaccgttcctggacgtgtcttcgtgctccgaactagt
tttggaactccaaccactgaaaacggatcaccagttatgatgcccgatatgacacctcat
cacgagccggagaagagccaattcgccgaattgctgccagaatcgcagaagattctgaag
tccgacactccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTATTTATGCGTTGGCCCATG 243 529 907 Antisense
ATATTCCACAATTCGTCCTGATCAC 425 19 974 Antisense
CGGCACGTACATTTACTGCTTCGAA 345 241 1047 Antisense
TTGACACCCAATGCGACGTTCGTAC 82 701 1076 Antisense
TGCCCAATTTACGCCTACAAGACCG 216 583 1111 Antisense
GAGTTTGTCTTCCGCAGAAGCTTCG 442 399 1141 Antisense
ATATTTACGCTACGACCGAGTCTGA 222 13 1175 Antisense
AATCAACCGTTCCTGGACGTGTCTT 250 169 1226 Antisense
GTTATGATGCCCGATATGACACCTC 536 447 1300 Antisense
AATTCGCCGAATTGCTGCCAGAATC 491 177 1346 Antisense
AAGATTCTGAAGTCCGACACTCCGA 519 155 1375 Antisense
Sequence Source Affymetrix Proprietary Database