[Home] | [Total List]

[178774_s_at]

Description T13F3.6 /REP_DB=WormBase Gene ID /WP=CE16412 /TR=O18089 /GB=CAB07673.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_total > 87      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 23.1
(-3)
P 		89.2
(0.2)
P 		85.2
(0)
P 		146.5
(3)
P 		123
B 23.9
(-3)
P 		106.7
(0.9)
P 		58.5
(-1.4)
P 		150.2
(3)
P 		126
C 28.8
(-3)
P 		51.5
(-1.7)
P 		71.4
(-0.5)
P 		133
(3)
P 		104
avr 25.3
(-3) 		82.5
(-0.1) 		71.7
(-0.6) 		143.2
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 866
1 2 3 4 5 6 range
A 25
(-3)
A 		36.7
(-2.9)
P 		151.6
(-1.6)
P 		125
(-1.9)
P 		320.8
(0.3)
P 		570.8
(3)
P 		546
B 8.2
(-3)
A 		69.4
(-2.5)
P 		190.4
(-1.6)
P 		154.6
(-1.9)
P 		341.2
(-0.5)
P 		805.4
(3)
P 		797
C 2.9
(-3)
A 		102.7
(-2.3)
P 		101.9
(-2.3)
P 		192.3
(-1.7)
P 		423.2
(-0.1)
P 		869
(3)
P 		866
avr 12
(-3) 		69.6
(-2.5) 		148
(-1.9) 		157.3
(-1.8) 		361.7
(-0.2) 		748.4
(3) 		736
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 8.4
(-3)
P 		19.4
(1.7)
P 		22.3
(3)
P 		21.4
(2.6)
P 		14
B 7.6
(-3)
P 		26.4
(1.6)
P 		13.6
(-1.5)
P 		32
(3)
P 		24
C 9.5
(-3)
P 		14.8
(-0.9)
P 		24.9
(3)
P 		22.4
(2)
P 		15
avr 8.5
(-3) 		20.2
(1.2) 		20.3
(1.2) 		25.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 4.6
(-3)
A 		13
(-2.6)
P 		33
(-1.7)
P 		31.7
(-1.8)
P 		96.8
(1.1)
P 		139
(3)
P 		134
B 2.8
(-3)
A 		23.1
(-2.6)
P 		46.2
(-2.1)
P 		40.9
(-2.2)
P 		138.6
(-0.3)
P 		300.3
(3)
P 		298
C 1.1
(-3)
A 		31.3
(-2.4)
P 		25.9
(-2.5)
P 		38.7
(-2.2)
P 		136.9
(-0.2)
P 		290.9
(3)
P 		290
avr 2.8
(-3) 		22.5
(-2.5) 		35
(-2.2) 		37.1
(-2.1) 		124.1
(0) 		243.4
(3) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178774_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14614
Sequence Type Exemplar sequence
Representative Public ID T13F3.6 NCBI
Target Description T13F3.6 /REP_DB=WormBase Gene ID /WP=CE16412 /TR=O18089 /GB=CAB07673.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074706 NCBI Caenorhabditis elegans T13F3.6 (T13F3.6) mRNA, complete cds. 11/11 A 
T13F3.6 ENSEMBL cdna:known chromosome:CEL140:V:16272777:16273792:-1 gene:T13F3.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028754 7/11 Cross Hyb Matching Probes None
GENEFINDER00000028764 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16272776-16273792(-) 91.67 100.0
Public Domain and Genome References
Gene Title
Ensembl T13F3.6
Entrez Gene 180092 Entrez gene
SwissProt O18089 EMBL-EBI
WormBase CE16412 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07673 Hypothetical protein T13F3.6 [Caenorhabditis elegans] ref|NP_507107.1| T13F3.6 [Caenorhabditis elegans] 1.0E-109
blast CAB07669 Hypothetical protein T13F3.5 [Caenorhabditis elegans] ref|NP_507106.1| T13F3.5 [Caenorhabditis elegans] 8.0E-61
blast CAE69642 Hypothetical protein CBG15883 [Caenorhabditis briggsae] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178774_S_AT
gacaatatttcatgcctcaacacacttttcaatgatgttcacgagccagaagtagatgag
tgcgatcaatgggacagtcttcaaccatgcattaaggaaaatatcgcaaatttgtgtgat
gaccaatcaggaaaaattcaggaacaatatatttcaaataagttttccgcgcattttgcg
ctttattatttattcgttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATATTTCATGCCTCAACACAC 148 365 328 Antisense
ATATTTCATGCCTCAACACACTTTT 442 19 332 Antisense
TTTTCAATGATGTTCACGAGCCAGA 709 671 353 Antisense
ACGAGCCAGAAGTAGATGAGTGCGA 156 93 368 Antisense
TCAATGGGACAGTCTTCAACCATGC 601 631 393 Antisense
GACAGTCTTCAACCATGCATTAAGG 413 369 400 Antisense
ATATCGCAAATTTGTGTGATGACCA 186 21 428 Antisense
ATTTCAAATAAGTTTTCCGCGCATT 519 15 478 Antisense
GTTTTCCGCGCATTTTGCGCTTTAT 152 447 489 Antisense
GCATTTTGCGCTTTATTATTTATTC 191 307 498 Antisense
TGCGCTTTATTATTTATTCGTTTTT 604 583 504 Antisense
Sequence Source Affymetrix Proprietary Database