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[178773_at]

Description T13F3.6 /REP_DB=WormBase Gene ID /WP=CE16412 /TR=O18089 /GB=CAB07673.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 38.2
(-3)
A 		111.8
(-0.9)
A 		171.9
(0.9)
A 		244.4
(3)
A 		206
B 20
(-3)
A 		73.1
(-1.2)
A 		152.6
(1.4)
M 		199.3
(3)
P 		179
C 44.2
(-3)
A 		98.7
(-1.4)
A 		144.8
(0)
M 		244.7
(3)
P 		201
avr 34.1
(-3) 		94.5
(-1.1) 		156.4
(0.8) 		229.5
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1352
1 2 3 4 5 6 range
A 33.7
(-3)
A 		92.8
(-2.7)
A 		283.9
(-1.9)
P 		355.8
(-1.5)
P 		834.5
(0.6)
P 		1358.1
(3)
P 		1324
B 6.3
(-3)
A 		140.1
(-2.4)
A 		191
(-2.1)
P 		196.1
(-2.1)
P 		823.4
(1)
P 		1243.8
(3)
P 		1238
C 58.4
(-3)
A 		132.1
(-2.7)
A 		332.2
(-1.7)
P 		241.9
(-2.2)
P 		750.1
(0.2)
P 		1358
(3)
P 		1300
avr 32.8
(-3) 		121.7
(-2.6) 		269
(-1.9) 		264.6
(-1.9) 		802.7
(0.6) 		1320
(3) 		1287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 13.9
(-3)
A 		24.3
(-1)
A 		44.9
(3)
A 		35.8
(1.2)
A 		31
B 6.4
(-3)
A 		18
(-1.1)
A 		35.4
(1.8)
M 		42.5
(3)
P 		36
C 14.6
(-3)
A 		28.4
(-0.7)
A 		50.5
(3)
M 		41.3
(1.5)
P 		36
avr 11.6
(-3) 		23.6
(-0.8) 		43.6
(3) 		39.9
(2.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 6.2
(-3)
A 		33
(-2.5)
A 		61.8
(-2)
P 		90.2
(-1.4)
P 		251.8
(1.5)
P 		330.7
(3)
P 		325
B 2.2
(-3)
A 		46.6
(-2.4)
A 		46.4
(-2.4)
P 		51.9
(-2.4)
P 		334.6
(1.3)
P 		463.8
(3)
P 		462
C 21.6
(-3)
A 		40.3
(-2.7)
A 		84.6
(-2.1)
P 		48.6
(-2.6)
P 		242.7
(0.1)
P 		454.6
(3)
P 		433
avr 10
(-3) 		40
(-2.6) 		64.3
(-2.2) 		63.6
(-2.2) 		276.4
(0.9) 		416.4
(3) 		406
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14614
Sequence Type Exemplar sequence
Representative Public ID T13F3.6 NCBI
Target Description T13F3.6 /REP_DB=WormBase Gene ID /WP=CE16412 /TR=O18089 /GB=CAB07673.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074706 NCBI Caenorhabditis elegans T13F3.6 (T13F3.6) mRNA, complete cds. 11/11 A 
SNAP00000028754 ENSEMBL cdna:SNAP chromosome:CEL140:V:16272917:16273792:-1 10/11 None
GENEFINDER00000028764 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16272917:16273792:-1 10/11 None
T13F3.6 ENSEMBL cdna:known chromosome:CEL140:V:16272777:16273792:-1 gene:T13F3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16272776-16273792(-) 91.67 100.0
Public Domain and Genome References
Gene Title
Ensembl T13F3.6
Entrez Gene 180092 Entrez gene
SwissProt O18089 EMBL-EBI
WormBase CE16412 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07673 Hypothetical protein T13F3.6 [Caenorhabditis elegans] ref|NP_507107.1| T13F3.6 [Caenorhabditis elegans] 1.0E-109
blast CAB07673 Hypothetical protein T13F3.6 [Caenorhabditis elegans] ref|NP_507107.1| T13F3.6 [Caenorhabditis elegans] 9.0E-89
blast CAB07673 Hypothetical protein T13F3.6 [Caenorhabditis elegans] ref|NP_507107.1| T13F3.6 [Caenorhabditis elegans] 5.0E-81
blast CAB07669 Hypothetical protein T13F3.5 [Caenorhabditis elegans] ref|NP_507106.1| T13F3.5 [Caenorhabditis elegans] 6.0E-67
blast CAE69642 Hypothetical protein CBG15883 [Caenorhabditis briggsae] 5.0E-62
blast CAB07669 Hypothetical protein T13F3.5 [Caenorhabditis elegans] ref|NP_507106.1| T13F3.5 [Caenorhabditis elegans] 8.0E-61
blast CAB07669 Hypothetical protein T13F3.5 [Caenorhabditis elegans] ref|NP_507106.1| T13F3.5 [Caenorhabditis elegans] 3.0E-59
blast CAE69642 Hypothetical protein CBG15883 [Caenorhabditis briggsae] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178773_AT
tggtcttccaatttttgcgacagcagctacaatggatgattgtaaaactattggtctagg
cttggagccaatcatcaagtcgataaatgttacagaccgatttttctggccaccggagac
atacaaagcttacgcagataaatgtgaagaaattataaattgtgtaaaatcggtggacgc
ttccctactagacaagttctcaaccaaagtgagcccttgcctattctatattttctacaa
tcgcgacttctcaaattgcgccaaaaagctgatcgcgaagaaagatgacaatatttcatg
cctcaacacacttttcaatgatgttcacgagccagaagtagatgagtgcgatcaatggga
cagtcttcaaccatgcattaaggaaaatatcgcaaatttgtgtgatgaccaatcaggaaa
aattcaggaacaatatatttcaaataagttttccgcgcattttgcgctttattatttatt
cgttttttttattgatataccagccgttcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCTTCCAATTTTTGCGACAGCA 549 551 42 Antisense
GCGACAGCAGCTACAATGGATGATT 558 287 58 Antisense
GGCTTGGAGCCAATCATCAAGTCGA 202 535 100 Antisense
GTTACAGACCGATTTTTCTGGCCAC 549 443 130 Antisense
TTTTCTGGCCACCGGAGACATACAA 708 673 143 Antisense
GTGTAAAATCGGTGGACGCTTCCCT 254 485 203 Antisense
ACGCTTCCCTACTAGACAAGTTCTC 541 91 218 Antisense
CTCAACCAAAGTGAGCCCTTGCCTA 31 227 240 Antisense
TTTCTACAATCGCGACTTCTCAAAT 483 669 273 Antisense
TCGCGACTTCTCAAATTGCGCCAAA 85 601 282 Antisense
TTTATTGATATACCAGCCGTTCGCA 355 673 529 Antisense
Sequence Source Affymetrix Proprietary Database