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[178772_at]

Description F36F2.1 /REP_DB=WormBase Gene ID /WP=CE15975 /TR=O62234 /GB=CAB04325.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 61      6grp_total > 20      4grp_total > 18      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 640
1 2 3 4 range
A 260.6
(-2.3)
P 		402.7
(-0.4)
P 		213.3
(-3)
P 		642.5
(3)
P 		429
B 293.1
(-2.1)
P 		379.3
(-1.3)
P 		194.8
(-3)
P 		834.5
(3)
P 		640
C 223.5
(-3)
P 		399.9
(-0.6)
P 		368.4
(-1)
P 		664.9
(3)
P 		441
avr 259.1
(-3) 		394
(-1.2) 		258.8
(-3) 		714
(3) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 315.7
(-3)
P 		599.9
(3)
P 		576.4
(2.5)
P 		523.1
(1.4)
P 		334.3
(-2.6)
P 		337
(-2.6)
P 		284
B 475.8
(0.6)
P 		548.6
(3)
P 		508.9
(1.7)
P 		364.2
(-3)
P 		364.7
(-3)
P 		410.5
(-1.5)
P 		184
C 422.8
(0.1)
P 		512
(3)
P 		426.2
(0.2)
P 		476.6
(1.8)
P 		327.6
(-3)
P 		431.6
(0.4)
P 		184
avr 404.8
(-1.2) 		553.5
(3) 		503.8
(1.6) 		454.6
(0.2) 		342.2
(-3) 		393
(-1.6) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 94.9
(3)
P 		87.4
(1.8)
P 		55.8
(-3)
P 		94.1
(2.9)
P 		39
B 93.5
(-0.8)
P 		93.7
(-0.8)
P 		45.1
(-3)
P 		177.8
(3)
P 		133
C 74
(-3)
P 		115
(1.5)
P 		128.4
(3)
P 		112.1
(1.2)
P 		54
avr 87.5
(-1.7) 		98.7
(-0.4) 		76.4
(-3) 		128
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 58.2
(-3)
P 		213.4
(3)
P 		125.5
(-0.4)
P 		132.7
(-0.1)
P 		100.9
(-1.3)
P 		82
(-2.1)
P 		155
B 165.6
(1.8)
P 		182.6
(3)
P 		123.6
(-1.1)
P 		96.5
(-3)
P 		148.2
(0.6)
P 		153.1
(0.9)
P 		86
C 156.7
(3)
P 		156.2
(3)
P 		108.5
(-1.7)
P 		95.8
(-3)
P 		106
(-2)
P 		144.5
(1.8)
P 		61
avr 126.8
(-1.5) 		184.1
(3) 		119.2
(-2.1) 		108.3
(-3) 		118.4
(-2.2) 		126.5
(-1.6) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1387
Sequence Type Exemplar sequence
Representative Public ID F36F2.1 NCBI
Target Description F36F2.1 /REP_DB=WormBase Gene ID /WP=CE15975 /TR=O62234 /GB=CAB04325.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060025 NCBI Caenorhabditis elegans F36F2.1 (F36F2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000021381 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9027641:9028293:1 11/11 None
SNAP00000021378 ENSEMBL cdna:SNAP chromosome:CEL140:I:9027752:9028293:1 10/11 None
F36F2.1 ENSEMBL cdna:known chromosome:CEL140:I:9026849:9028405:1 gene:F36F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9027544-9028224(+) 95.09 95.09
Public Domain and Genome References
Gene Title
Ensembl F36F2.1
Entrez Gene 172722 Entrez gene
SwissProt O62234 EMBL-EBI
WormBase CE15975 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18249.1.S1_S_AT similar to striated muscle activator of Rho-dependent signaling cfa
CANINE_2:CFAAFFX.1954.1.S1_AT similar to striated muscle activator of Rho-dependent signaling cfa
U133_X3P:HS2.374668.1.S2_3P_AT striated muscle activator of Rho-dependent signaling hs
U133_X3P:HS2.374668.1.S1_3P_AT striated muscle activator of Rho-dependent signaling hs
HG-U133_PLUS_2:1552731_AT striated muscle activator of Rho-dependent signaling hs
HG-U133_PLUS_2:1552732_AT striated muscle activator of Rho-dependent signaling hs
MG-U74BV2:114553_AT RIKEN cDNA C130068O12 gene mm
MOE430B:1458455_AT RIKEN cDNA C130068O12 gene mm
MOUSE430_2:1458455_AT RIKEN cDNA C130068O12 gene mm
MU19KSUBA:TC22256_AT RIKEN cDNA C130068O12 gene (C130068O12Rik), mRNA mm
RG-U34C:RC_AI172339_AT striated muscle activator of Rho-dependent signaling rn
RAE230B:1390881_AT striated muscle activator of Rho-dependent signaling rn
RAT230_2:1390881_AT striated muscle activator of Rho-dependent signaling rn
Protein Similarities
Method ID Description E-Value
blast CAB04325 Hypothetical protein F36F2.1 [Caenorhabditis elegans] ref|NP_492426.1| F36F2.1 [Caenorhabditis elegans] 3.0E-87
blast CAB04325 Hypothetical protein F36F2.1 [Caenorhabditis elegans] ref|NP_492426.1| F36F2.1 [Caenorhabditis elegans] 1.0E-77
blast CAE67020 Hypothetical protein CBG12421 [Caenorhabditis briggsae] 7.0E-74
blast CAE67020 Hypothetical protein CBG12421 [Caenorhabditis briggsae] 5.0E-69
blast CAB04325 Hypothetical protein F36F2.1 [Caenorhabditis elegans] ref|NP_492426.1| F36F2.1 [Caenorhabditis elegans] 1.0E-64
blast CAE67020 Hypothetical protein CBG12421 [Caenorhabditis briggsae] 9.0E-59
blast XP_428503 PREDICTED: similar to striated muscle activator of Rho-dependent signaling, partial [Gallus gallus] 4.0E-29
blast XP_428503 PREDICTED: similar to striated muscle activator of Rho-dependent signaling, partial [Gallus gallus] 7.0E-29
Sequence
Target Sequence 
>C. ELEGANS:178772_AT
ggagcagaatgtagcgactcagagcaaagatgatgtgtattccaaagattttactcaaaa
gaaaatggacaagtccagtagcgaatatggacggccaaaaccaggaactcttacagagca
aagagctaaaaaagctgccgcccacgttcacagagaaatgctaacattatgtgaagttgt
ggaggattatggtaaacaagagaaggaaggagatccaatcagaatcacatttggaagact
tttcacaatttatgtcaatatttctgataaggtagttggaacccttttgcgagctcgtaa
acacaaaatgatagattttgaaggagaaatgttatttcaaaagagagatgatcatgttat
tatcacacttttactctctggagcacagcttaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGAATGTAGCGACTCAGAGC 357 519 66 Antisense
GTAGCGAATATGGACGGCCAAAACC 646 455 143 Antisense
GGCCAAAACCAGGAACTCTTACAGA 226 543 158 Antisense
AAGAGCTAAAAAAGCTGCCGCCCAC 328 153 186 Antisense
CCGCCCACGTTCACAGAGAAATGCT 290 263 203 Antisense
GAAGGAGATCCAATCAGAATCACAT 75 335 271 Antisense
GAATCACATTTGGAAGACTTTTCAC 534 327 287 Antisense
GGTAGTTGGAACCCTTTTGCGAGCT 248 503 336 Antisense
GAACCCTTTTGCGAGCTCGTAAACA 164 345 344 Antisense
GTTATTATCACACTTTTACTCTCTG 693 447 421 Antisense
TTTACTCTCTGGAGCACAGCTTAAA 706 671 435 Antisense
Sequence Source Affymetrix Proprietary Database