[Home] | [Total List]

[178770_at]

Description C14A4.7 /REP_DB=WormBase Gene ID /WP=CE02148 /TR=Q17954 /GB=CAA90111.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 51      4grp_high_8_8 > 60      6grp_total > 52      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 235.1
(2.9)
P 		188.4
(0.7)
P 		238.3
(3)
P 		108.8
(-3)
P 		130
B 216.3
(1.1)
P 		280.3
(3)
P 		248.4
(2.1)
P 		77.6
(-3)
A 		203
C 238.9
(0.7)
P 		261
(1.6)
P 		297.2
(3)
P 		142.3
(-3)
P 		155
avr 230.1
(1.8) 		243.2
(2.3) 		261.3
(3) 		109.6
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 227.6
(-1.7)
P 		267.8
(-0.9)
P 		464
(3)
P 		283.8
(-0.6)
P 		290.8
(-0.4)
P 		161.1
(-3)
A 		303
B 234.3
(-0.8)
P 		228.1
(-1)
P 		364
(2.4)
P 		386.7
(3)
P 		299.2
(0.8)
P 		147.5
(-3)
P 		239
C 221.4
(0.3)
P 		275.8
(2.5)
P 		285.4
(2.8)
P 		289.2
(3)
P 		224
(0.4)
P 		137.3
(-3)
M 		152
avr 227.8
(-0.9) 		257.2
(-0.1) 		371.1
(3) 		319.9
(1.6) 		271.3
(0.3) 		148.6
(-3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 85.6
(3)
P 		40.9
(-0.8)
P 		62.3
(1)
P 		15.9
(-3)
P 		70
B 69
(3)
P 		69.2
(3)
P 		57.6
(1.7)
P 		16.5
(-3)
A 		53
C 79.1
(1.2)
P 		75
(0.8)
P 		103.6
(3)
P 		24
(-3)
P 		80
avr 77.9
(3) 		61.7
(1.4) 		74.5
(2.7) 		18.8
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 42
(-2.7)
P 		95.2
(2.4)
P 		101.1
(3)
P 		72
(0.2)
P 		87.8
(1.7)
P 		39.2
(-3)
A 		62
B 81.5
(-0.6)
P 		75.9
(-1.1)
P 		88.4
(0)
P 		102.4
(1.3)
P 		121.6
(3)
P 		55
(-3)
P 		67
C 82.1
(2.7)
P 		84.2
(3)
P 		72.6
(1.2)
P 		58.2
(-1.1)
P 		72.5
(1.2)
P 		45.9
(-3)
M 		38
avr 68.5
(-0.2) 		85.1
(1.9) 		87.4
(2.2) 		77.5
(0.9) 		94
(3) 		46.7
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3282
Sequence Type Exemplar sequence
Representative Public ID C14A4.7 NCBI
Target Description C14A4.7 /REP_DB=WormBase Gene ID /WP=CE02148 /TR=Q17954 /GB=CAA90111.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026780 NCBI Caenorhabditis elegans C14A4.7a (C14A4.7) mRNA, complete cds. 11/11 None
C14A4.7a ENSEMBL cdna:known chromosome:CEL140:II:10595212:10596473:-1 gene:C14A4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026781 7/11 Cross Hyb Matching Probes None
SNAP00000002488 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002498 8/11 Cross Hyb Matching Probes None
C14A4.7b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174635 2 1 NM_001026780 178770_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10595238-10596470(-) 100.0 100.0
Public Domain and Genome References
Ensembl C14A4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90111 Hypothetical protein C14A4.7a [Caenorhabditis elegans] ref|NP_001021951.1| C14A4.7a [Caenorhabditis elegans] 2.0E-98
blast CAE59643 Hypothetical protein CBG03057 [Caenorhabditis briggsae] 2.0E-51
blast CAE54884 Hypothetical protein C14A4.7b [Caenorhabditis elegans] ref|NP_001021952.1| C14A4.7b [Caenorhabditis elegans] 6.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021951.1 4 55-77,87-107,123-145,155-174
C14A4.7a 4 55-77,87-107,123-145,155-174
Sequence
Target Sequence 
>C. ELEGANS:178770_AT
agacaactcaagacggtttccaccaaaaatactatttttccatcttcttatttattcaac
tctcctgcaaatgacgcttcgattcgaacgatttaggcactttccggaaagtggaaaaac
tatcactttgcttctcagtgctgtactcggactagtactttccttcacagatcttcatta
tcctaaagaagccaagttcttctggatcagcttttggatttcctttgcctttgatgttat
cacaatcttgatccttttaaaagactgggatgaaaatgttgaatggatgagaaaagcacc
gtattcggtgtatcattgtctggcctcactgctcgtcagctttttcatttttatgtccgg
aatcttgttcataaccagtgaatcgtattctggagatggtgttctgtatgttggagcttt
cttctgtttcctgatcttcggagttcgaatcgcgtgtattttcaaatcattgccacaact
gagacaagatgttcactttccaggtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACAACTCAAGACGGTTTCCACCA 186 69 75 Antisense
TCTTCTTATTTATTCAACTCTCCTG 292 617 117 Antisense
AACTCTCCTGCAAATGACGCTTCGA 438 141 132 Antisense
TTGCTTCTCAGTGCTGTACTCGGAC 678 701 202 Antisense
TAGTACTTTCCTTCACAGATCTTCA 23 653 227 Antisense
AGCTTTTGGATTTCCTTTGCCTTTG 330 77 283 Antisense
ATTCGGTGTATCATTGTCTGGCCTC 668 9 377 Antisense
TCACTGCTCGTCAGCTTTTTCATTT 60 627 400 Antisense
GTATGTTGGAGCTTTCTTCTGTTTC 48 457 480 Antisense
TCTGTTTCCTGATCTTCGGAGTTCG 527 607 497 Antisense
ACAAGATGTTCACTTTCCAGGTCGG 107 113 558 Antisense
Sequence Source Affymetrix Proprietary Database