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[178769_at]

Description B0019.3 /REP_DB=WormBase Gene ID /WP=CE20442 /TR=Q9XTC2 /GB=CAA22332.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 70      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 84.4
(-3)
P 		106.4
(0.3)
P 		89.1
(-2.3)
P 		123.9
(3)
P 		40
B 110.9
(-3)
P 		122
(0.2)
A 		120.4
(-0.3)
P 		131.9
(3)
P 		21
C 98.9
(-1)
M 		106.2
(-0.5)
P 		65.6
(-3)
P 		164.4
(3)
A 		99
avr 98.1
(-2.2) 		111.5
(-0.5) 		91.7
(-3) 		140.1
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 93
(1.3)
A 		54.7
(-3)
A 		82.7
(0.1)
M 		104
(2.5)
A 		105.3
(2.6)
P 		108.6
(3)
A 		54
B 78.6
(0.3)
P 		98.8
(3)
P 		90.8
(1.9)
P 		87.4
(1.5)
P 		68.6
(-1)
A 		53.6
(-3)
A 		45
C 74.1
(-1.5)
P 		93.1
(1.5)
P 		80.2
(-0.5)
P 		102.3
(3)
P 		77.9
(-0.9)
P 		64.3
(-3)
M 		38
avr 81.9
(-1.3) 		82.2
(-1.2) 		84.6
(-0.6) 		97.9
(3) 		83.9
(-0.7) 		75.5
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 30.7
(3)
P 		23.1
(-0.6)
P 		23.3
(-0.5)
P 		18.1
(-3)
P 		13
B 35.4
(3)
P 		30.1
(-1.2)
A 		27.9
(-3)
P 		28.1
(-2.8)
P 		8
C 32.7
(3)
M 		30.5
(1.7)
P 		22.9
(-3)
P 		27.7
(-0.1)
A 		10
avr 32.9
(3) 		27.9
(-0.6) 		24.7
(-2.9) 		24.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 17.1
(-3)
A 		19.5
(-2)
A 		18
(-2.6)
M 		26.4
(0.8)
A 		31.8
(3)
P 		26.4
(0.8)
A 		15
B 27.3
(0.4)
P 		32.9
(3)
P 		22
(-2.1)
P 		23.1
(-1.6)
P 		27.9
(0.7)
A 		20
(-3)
A 		13
C 27.4
(2.3)
P 		28.4
(3)
P 		20.4
(-3)
P 		20.6
(-2.9)
P 		25.2
(0.6)
P 		21.5
(-2.2)
M 		8
avr 23.9
(-0.2) 		26.9
(2) 		20.1
(-3) 		23.4
(-0.6) 		28.3
(3) 		22.6
(-1.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1465
Sequence Type Exemplar sequence
Representative Public ID B0019.3 NCBI
Target Description B0019.3 /REP_DB=WormBase Gene ID /WP=CE20442 /TR=Q9XTC2 /GB=CAA22332.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026555
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000449 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12789102:12792402:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026555 8/11 Cross Hyb Matching Probes None
NM_060836 1/11 Cross Hyb Matching Probes None
SNAP00000000407 1/11 Cross Hyb Matching Probes None
SNAP00000000408 8/11 Cross Hyb Matching Probes None
B0019.2 1/11 Cross Hyb Matching Probes A 
Y18D10A.26 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12784597-12792333(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18636 hypothetical protein B0019.3 - Caenorhabditis elegans 1.0E-155
blast CAH19089 Hypothetical protein Y18D10A.26 [Caenorhabditis elegans] ref|NP_001021726.1| Y18D10A.26 [Caenorhabditis elegans] 2.0E-89
blast CAH19090 Hypothetical protein B0019.2 [Caenorhabditis elegans] emb|CAA15508.2| Hypothetical protein B0019.2 [Caenorhabditis elegans] ref|NP_493237.2| B0019.2 [Caenorhabditis elegans] 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:178769_AT
agataatcaacatgcggcctgctttgatcgagtttcgccgcaagctcatatattctccga
tgaatctgctgcttctttgatcggtttgaactccaacatcggttacccagacgaagattc
gattttggatactacaaaaatttacaccgccttcaacaccaccgggttaacagtccatga
agggtttcattttttacaaggcgatggaaatctccccaagattctagtttccattgtgga
ttacaatccaatgctgtttggaaaaaacagaatcgttctttcggttattttgatggatga
tgaagcaaaagacagagtgaataaattgattggaccaataggagaacagtattccgtgca
tcatatttcgaagaatattccatttctggtaccgtatagatcgtggctctcacatttggc
tgcaatcgttttggccacagatgctagaatctgtggtcgcccactttcaaatgagctctt
ggagaagaagctcgcggatccttatgagatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATAATCAACATGCGGCCTGCTTT 222 67 939 Antisense
CGGCCTGCTTTGATCGAGTTTCGCC 410 241 953 Antisense
TTCGCCGCAAGCTCATATATTCTCC 433 697 972 Antisense
AATCTGCTGCTTCTTTGATCGGTTT 408 169 1001 Antisense
TTTGAACTCCAACATCGGTTACCCA 524 453 1023 Antisense
ACACCACCGGGTTAACAGTCCATGA 612 89 1094 Antisense
ATCTCCCCAAGATTCTAGTTTCCAT 523 31 1148 Antisense
TAGATCGTGGCTCTCACATTTGGCT 337 651 1335 Antisense
GCAATCGTTTTGGCCACAGATGCTA 540 321 1360 Antisense
GTCGCCCACTTTCAAATGAGCTCTT 529 473 1394 Antisense
GAAGCTCGCGGATCCTTATGAGATT 263 343 1425 Antisense
Sequence Source Affymetrix Proprietary Database