[Home] | [Total List]

[178767_at]

Description C10C5.2 /REP_DB=WormBase Gene ID /WP=CE03010 /TR=Q17896 /GB=CAA92443.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 14      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 04      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 71.1
(-2.3)
P 		73
(-2.2)
A 		50.2
(-3)
A 		220.8
(3)
P 		171
B 139
(1.2)
P 		33.5
(-3)
A 		76.5
(-1.3)
A 		184.3
(3)
P 		151
C 108.6
(-1.4)
P 		44.2
(-3)
A 		70.5
(-2.3)
P 		282.6
(3)
P 		238
avr 106.2
(-1.1) 		50.2
(-3) 		65.7
(-2.5) 		229.2
(3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 194.2
(-0.9)
P 		269.2
(1.6)
P 		309.3
(3)
P 		234
(0.5)
P 		195.9
(-0.8)
P 		131.3
(-3)
P 		178
B 402.4
(3)
P 		269.5
(0)
P 		224
(-1)
P 		161.4
(-2.4)
P 		220.3
(-1.1)
P 		135.9
(-3)
P 		267
C 314.7
(2.8)
P 		321.1
(3)
P 		109.5
(-3)
P 		276.1
(1.7)
P 		115
(-2.8)
P 		203.6
(-0.3)
P 		212
avr 303.8
(3) 		286.6
(2.3) 		214.3
(-0.7) 		223.8
(-0.3) 		177.1
(-2.2) 		156.9
(-3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 25.9
(1)
P 		15.8
(-2.2)
A 		13.1
(-3)
A 		32.3
(3)
P 		19
B 44.3
(3)
P 		8.3
(-3)
A 		17.7
(-1.4)
A 		39.3
(2.2)
P 		36
C 36
(1)
P 		12.7
(-3)
A 		24.6
(-1)
P 		47.7
(3)
P 		35
avr 35.4
(2) 		12.3
(-3) 		18.5
(-1.6) 		39.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 35.8
(-2.6)
P 		95.8
(3)
P 		67.4
(0.3)
P 		59.3
(-0.4)
P 		59.1
(-0.5)
P 		32
(-3)
P 		64
B 140
(3)
P 		89.7
(-0.1)
P 		54.4
(-2.3)
P 		42.7
(-3)
P 		89.5
(-0.1)
P 		50.7
(-2.5)
P 		97
C 116.7
(3)
P 		98
(1.7)
P 		27.9
(-3)
P 		55.5
(-1.1)
P 		37.2
(-2.4)
P 		68.2
(-0.3)
P 		89
avr 97.5
(3) 		94.5
(2.6) 		49.9
(-3) 		52.5
(-2.7) 		61.9
(-1.5) 		50.3
(-2.9) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10315
Sequence Type Exemplar sequence
Representative Public ID C10C5.2 NCBI
Target Description C10C5.2 /REP_DB=WormBase Gene ID /WP=CE03010 /TR=Q17896 /GB=CAA92443.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069248 NCBI Caenorhabditis elegans C10C5.2 (C10C5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010275 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9371486:9373113:1 10/11 None
C10C5.2 ENSEMBL cdna:known chromosome:CEL140:IV:9371486:9373633:1 gene:C10C5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010264 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9371491-9373639(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10C5.2
Entrez Gene 182493 Entrez gene
SwissProt Q17896 EMBL-EBI
WormBase CE03010 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92443 Hypothetical protein C10C5.2 [Caenorhabditis elegans] ref|NP_501649.1| C10C5.2 [Caenorhabditis elegans] 0.0
blast CAE74388 Hypothetical protein CBG22119 [Caenorhabditis briggsae] 2.0E-56
blast CAE74406 Hypothetical protein CBG22138 [Caenorhabditis briggsae] 6.0E-56
blast CAE74406 Hypothetical protein CBG22138 [Caenorhabditis briggsae] 7.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-6
Sequence
Target Sequence 
>C. ELEGANS:178767_AT
gaaataatcatgacgccttatggatgaaacaatttattcttgaatttaaaaatcttacaa
ttataaaataccatccacatgaagatattggattcacgtattccgaactcaaagtttcaa
attcattgaatctcaactgcgatattggcattactgataaggatttacttgaaatcaaag
caacaagtttgaatatttcatcacaacttatcacagtagaaggagcaaagaaagcccttg
agagatttttgaaacgaggaaagaaaaccgatactttcgttttggaaatcagaagacctg
aaaatttcaatgcacaagagcacattattccaaaatctttggttatccgaaaaattatca
gaagaggagaaaccgaagacgaatattacggaaaaatctttcgtggattcgaaaatgaaa
atggcgtccaagatgttcgtgatttcaattcttctctaatgggtgataaattaatagtat
catgtagtgtttatgaaaagagtgagactccttgccaactatacccattttattatagtt
atgcactcgacttcaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATAATCATGACGCCTTATGGAT 411 363 464 Antisense
TTGGATTCACGTATTCCGAACTCAA 621 703 551 Antisense
GAATCTCAACTGCGATATTGGCATT 220 329 591 Antisense
GAATATTTCATCACAACTTATCACA 33 327 654 Antisense
AAGCCCTTGAGAGATTTTTGAAACG 285 149 695 Antisense
TGCACAAGAGCACATTATTCCAAAA 413 577 774 Antisense
AATGGCGTCCAAGATGTTCGTGATT 100 163 883 Antisense
ATGTTCGTGATTTCAATTCTTCTCT 584 47 896 Antisense
AAGAGTGAGACTCCTTGCCAACTAT 609 153 961 Antisense
CTTGCCAACTATACCCATTTTATTA 391 219 974 Antisense
ATAGTTATGCACTCGACTTCAACAA 51 23 998 Antisense
Sequence Source Affymetrix Proprietary Database