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[178766_at]

Description R11D1.4 /REP_DB=WormBase Gene ID /WP=CE06309 /TR=Q21931 /GB=CAA99899.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1173
1 2 3 4 range
A 2.5
(-3)
A 		2.1
(-3)
A 		6.3
(-3)
A 		942.3
(3)
P 		940
B 4.9
(-3)
A 		4.4
(-3)
A 		5.3
(-3)
A 		1163.6
(3)
P 		1159
C 6.3
(-3)
A 		2.9
(-3)
A 		2.6
(-3)
A 		1175.5
(3)
P 		1173
avr 4.6
(-3) 		3.1
(-3) 		4.7
(-3) 		1093.8
(3) 		1091

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 7.4
(-2.9)
A 		3
(-3)
A 		2.2
(-3)
A 		5.5
(-2.9)
A 		113
(-1.2)
P 		379.5
(3)
P 		377
B 31.8
(-2.5)
A 		4.1
(-3)
A 		3.5
(-3)
A 		3.1
(-3)
A 		122.6
(-0.8)
P 		328.2
(3)
P 		325
C 2.6
(-3)
A 		2.9
(-3)
A 		3.8
(-3)
A 		2.9
(-3)
A 		108.6
(-1.4)
P 		394.7
(3)
P 		392
avr 13.9
(-2.8) 		3.3
(-3) 		3.2
(-3) 		3.8
(-3) 		114.7
(-1.2) 		367.5
(3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 0.9
(-3)
A 		0.5
(-3)
A 		1.7
(-2.9)
A 		137.9
(3)
P 		137
B 1.6
(-3)
A 		1.1
(-3)
A 		1.2
(-3)
A 		248
(3)
P 		247
C 2.1
(-3)
A 		0.8
(-3)
A 		0.9
(-3)
A 		198.2
(3)
P 		197
avr 1.5
(-3) 		0.8
(-3) 		1.3
(-3) 		194.7
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		1.1
(-3)
A 		0.5
(-3)
A 		1.4
(-2.9)
A 		34.1
(-0.8)
P 		92.4
(3)
P 		92
B 11.1
(-2.5)
A 		1.4
(-3)
A 		0.9
(-3)
A 		0.8
(-3)
A 		49.8
(-0.6)
P 		122.4
(3)
P 		122
C 1
(-3)
A 		0.9
(-3)
A 		1
(-3)
A 		0.6
(-3)
A 		35.2
(-1.4)
P 		132.1
(3)
P 		132
avr 4.5
(-2.8) 		1.1
(-3) 		0.8
(-3) 		0.9
(-3) 		39.7
(-1) 		115.6
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13104
Sequence Type Exemplar sequence
Representative Public ID R11D1.4 NCBI
Target Description R11D1.4 /REP_DB=WormBase Gene ID /WP=CE06309 /TR=Q21931 /GB=CAA99899.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073774 NCBI Caenorhabditis elegans R11D1.4 (R11D1.4) mRNA, complete cds. 11/11 None
SNAP00000040852 ENSEMBL cdna:SNAP chromosome:CEL140:V:12715625:12716810:-1 10/11 None
GENEFINDER00000040862 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12715625:12716810:-1 10/11 None
R11D1.4 ENSEMBL cdna:known chromosome:CEL140:V:12715625:12716843:-1 gene:R11D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12715624-12716843(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11D1.4
Entrez Gene 187805 Entrez gene
SwissProt Q21931 EMBL-EBI
WormBase CE06309 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99899 Hypothetical protein R11D1.4 [Caenorhabditis elegans] ref|NP_506175.1| R11D1.4 [Caenorhabditis elegans] 1.0E-115
blast CAA99899 Hypothetical protein R11D1.4 [Caenorhabditis elegans] ref|NP_506175.1| R11D1.4 [Caenorhabditis elegans] 1.0E-109
blast CAE63972 Hypothetical protein CBG08562 [Caenorhabditis briggsae] 3.0E-60
blast CAE63971 Hypothetical protein CBG08560 [Caenorhabditis briggsae] 4.0E-50
Sequence
Target Sequence 
>C. ELEGANS:178766_AT
tgagtaccatggcacgttcgatcttcatctttattgttattttcgtgcaatattcccatg
gaaccaatcgagactccgtcatggaaatggcgatttcaaaatttgggctcattttttacg
atcagccacaattaactattattgctatatgttgcgagaagcaagtctatgcgaccccta
acaacaacactgcaatcaaccaagaagcgaaaaaatgtatttttgaaaattctggaaaca
aagctcttcaggcgattgcactttataataacataaataattgtctcagcccagaaactc
tcgattcggtactcgaagacttgcaaccagcaatattggccaacttagctggtctgctcc
aaaaacttagaacatctctaatcaattgcaaggcatcaggagatgctaaactagagactt
gtgcacaaaaagtatatggtctcatattgacagagttaactttcaaatacgtggataact
tttgcattaaaattgtcaccgaaaatgcgacaccaattcaatggagttgtggcaagaaat
accttccaaatattctcactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGTACCATGGCACGTTCGATCTT 69 569 38 Antisense
TTTCGTGCAATATTCCCATGGAACC 561 669 78 Antisense
GAACCAATCGAGACTCCGTCATGGA 289 345 98 Antisense
ATTTGGGCTCATTTTTTACGATCAG 51 19 138 Antisense
AGAAGCAAGTCTATGCGACCCCTAA 527 73 194 Antisense
ACCCCTAACAACAACACTGCAATCA 488 89 211 Antisense
AAGCTCTTCAGGCGATTGCACTTTA 127 151 278 Antisense
TCAGCCCAGAAACTCTCGATTCGGT 79 625 323 Antisense
GGTACTCGAAGACTTGCAACCAGCA 185 505 345 Antisense
ATTGGCCAACTTAGCTGGTCTGCTC 318 3 372 Antisense
ATACCTTCCAAATATTCTCACTTTT 560 21 576 Antisense
Sequence Source Affymetrix Proprietary Database