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[178765_at]

Description T01C3.2 /REP_DB=WormBase Gene ID /WP=CE23935 /TR=Q22056 /GB=CAB01660.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 95      6grp_total > 76      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 762
1 2 3 4 range
A 348
(-3)
P 		541.4
(-1.3)
P 		354.6
(-2.9)
P 		1032.5
(3)
P 		685
B 490.4
(-1.9)
P 		384.7
(-3)
P 		399.3
(-2.8)
P 		943
(3)
P 		558
C 499.2
(-0.9)
P 		270.6
(-3)
P 		358.1
(-2.2)
P 		919.3
(3)
P 		649
avr 445.9
(-2.2) 		398.9
(-2.7) 		370.7
(-3) 		964.9
(3) 		594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1097
1 2 3 4 5 6 range
A 268.3
(-3)
P 		386.1
(-2.1)
P 		778.8
(1)
P 		517.3
(-1.1)
P 		614.2
(-0.3)
P 		1040.7
(3)
P 		772
B 323
(-3)
P 		545.2
(-1.5)
P 		709.7
(-0.5)
P 		607.4
(-1.1)
P 		827.5
(0.3)
P 		1236
(3)
P 		913
C 332.4
(-3)
P 		487.4
(-2.1)
P 		503.4
(-2)
P 		456.5
(-2.3)
P 		591.2
(-1.5)
P 		1365.2
(3)
P 		1033
avr 307.9
(-3) 		472.9
(-1.9) 		664
(-0.6) 		527.1
(-1.5) 		677.6
(-0.6) 		1214
(3) 		906
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 126.7
(0.5)
P 		117.5
(-0.5)
P 		92.7
(-3)
P 		151.1
(3)
P 		58
B 156.4
(0.5)
P 		95
(-2.9)
P 		92.5
(-3)
P 		201
(3)
P 		109
C 165.3
(3)
P 		77.8
(-3)
P 		124.8
(0.2)
P 		155
(2.3)
P 		88
avr 149.5
(1.4) 		96.8
(-3) 		103.3
(-2.5) 		169
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 49.5
(-3)
P 		137.3
(-0.4)
P 		169.6
(0.5)
P 		131.2
(-0.6)
P 		185.3
(1)
P 		253.4
(3)
P 		204
B 112.4
(-3)
P 		181.5
(-1.8)
P 		172.3
(-2)
P 		160.9
(-2.2)
P 		336.2
(0.9)
P 		460.9
(3)
P 		349
C 123.2
(-2.5)
P 		148.7
(-2.1)
P 		128.1
(-2.4)
P 		91.8
(-3)
P 		191.3
(-1.4)
P 		457
(3)
P 		365
avr 95
(-3) 		155.8
(-1.8) 		156.7
(-1.7) 		128
(-2.3) 		237.6
(-0.1) 		390.4
(3) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13717
Sequence Type Exemplar sequence
Representative Public ID T01C3.2 NCBI
Target Description T01C3.2 /REP_DB=WormBase Gene ID /WP=CE23935 /TR=Q22056 /GB=CAB01660.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074285 NCBI Caenorhabditis elegans T01C3.2 (T01C3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000022421 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14993774:14994159:1 11/11 None
T01C3.2 ENSEMBL cdna:known chromosome:CEL140:V:14993752:14994228:1 gene:T01C3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022408 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14993773-14994159(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C3.2
Entrez Gene 179996 Entrez gene
SwissProt Q22056 EMBL-EBI
WormBase CE23935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01660 Hypothetical protein T01C3.2 [Caenorhabditis elegans] ref|NP_506686.1| T01C3.2 [Caenorhabditis elegans] 6.0E-48
blast CAE66342 Hypothetical protein CBG11594 [Caenorhabditis briggsae] 5.0E-41
Sequence
Target Sequence 
>C. ELEGANS:178765_AT
atgaacgacgacctgatcatgcgtaagaagccagagcagatcgaaatggaatttcaagac
agtggagagtcggcgcttgtaaaaagtacattactcagcagtctgcaaaatagtgaatgg
gagatcgctgtgaggaaagaagtgaagaagttcttggagaaagccagagatgacgtgagt
gccaaggaggttttcgatgctgtcaaggatatggcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACGACGACCTGATCATGCGTA 8 45 13 Antisense
CGACCTGATCATGCGTAAGAAGCCA 386 251 21 Antisense
GCGTAAGAAGCCAGAGCAGATCGAA 168 291 33 Antisense
CAGTGGAGAGTCGGCGCTTGTAAAA 518 205 72 Antisense
AAAGTACATTACTCAGCAGTCTGCA 29 123 95 Antisense
AGCAGTCTGCAAAATAGTGAATGGG 315 69 109 Antisense
GTGAATGGGAGATCGCTGTGAGGAA 118 481 125 Antisense
AAGCCAGAGATGACGTGAGTGCCAA 270 149 173 Antisense
GAGTGCCAAGGAGGTTTTCGATGCT 29 401 189 Antisense
GGAGGTTTTCGATGCTGTCAAGGAT 319 515 198 Antisense
GATGCTGTCAAGGATATGGCGAGAA 233 413 208 Antisense
Sequence Source Affymetrix Proprietary Database