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[178764_at]

Description K10G4.1 /REP_DB=WormBase Gene ID /WP=CE16244 /TR=O45674 /GB=CAB07258.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 6.8
(-2.4)
A 		17.2
(-0.2)
A 		4
(-3)
A 		32.6
(3)
A 		29
B 14.1
(-0.8)
A 		5.7
(-2.7)
A 		4.2
(-3)
A 		31.5
(3)
A 		27
C 19.3
(0)
A 		31.1
(2.2)
A 		2.6
(-3)
A 		35.5
(3)
A 		33
avr 13.4
(-1) 		18
(-0.1) 		3.6
(-3) 		33.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 20.6
(1.2)
A 		5.4
(-2.4)
A 		4.1
(-2.7)
A 		2.9
(-3)
A 		28.4
(3)
A 		3.5
(-2.9)
A 		26
B 19.1
(0.9)
A 		24.2
(3)
A 		20.7
(1.5)
A 		17.6
(0.2)
A 		9.9
(-3)
A 		11.1
(-2.5)
A 		14
C 14.6
(1.6)
A 		3.2
(-2.6)
A 		18.4
(3)
A 		6.2
(-1.5)
A 		2.1
(-3)
A 		7.4
(-1)
A 		16
avr 18.1
(3) 		10.9
(-1) 		14.4
(0.9) 		8.9
(-2.1) 		13.5
(0.4) 		7.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.5
(-0.7)
A 		3.7
(1.2)
A 		1.1
(-3)
A 		4.8
(3)
A 		4
B 4.5
(0.7)
A 		1.4
(-2.6)
A 		1
(-3)
A 		6.7
(3)
A 		6
C 6.4
(1.1)
A 		9
(3)
A 		0.9
(-3)
A 		6
(0.8)
A 		8
avr 4.5
(1.4) 		4.7
(1.6) 		1
(-3) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.8
(-0.6)
A 		1.9
(-2.1)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		8.6
(3)
A 		0.8
(-2.9)
A 		8
B 6.6
(0.8)
A 		8.1
(3)
A 		5
(-1.5)
A 		4.7
(-2)
A 		4
(-3)
A 		4.1
(-2.9)
A 		4
C 5.4
(3)
A 		1
(-2.6)
A 		4.7
(2.1)
A 		1.2
(-2.4)
A 		0.7
(-3)
A 		2.5
(-0.7)
A 		5
avr 5.3
(3) 		3.7
(-0.1) 		3.5
(-0.5) 		2.2
(-3) 		4.4
(1.3) 		2.5
(-2.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12923
Sequence Type Exemplar sequence
Representative Public ID K10G4.1 NCBI
Target Description K10G4.1 /REP_DB=WormBase Gene ID /WP=CE16244 /TR=O45674 /GB=CAB07258.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074976 NCBI Caenorhabditis elegans K10G4.1 (K10G4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034118 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17280944:17287994:-1 10/11 None
K10G4.1 ENSEMBL cdna:known chromosome:CEL140:V:17280944:17284502:-1 gene:K10G4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027364 2/11 Cross Hyb Matching Probes None
SNAP00000034109 5/11 Cross Hyb Matching Probes None
K03D7.3 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17280943-17284502(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10G4.1
Entrez Gene 187276 Entrez gene
SwissProt O45674 EMBL-EBI
WormBase CE16244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07258 Hypothetical protein K10G4.1 [Caenorhabditis elegans] ref|NP_507377.1| K10G4.1 [Caenorhabditis elegans] 0.0
blast CAB07551 Hypothetical protein C01B9.1 [Caenorhabditis elegans] ref|NP_496885.1| C01B9.1 [Caenorhabditis elegans] 0.0
blast CAB04646 Hypothetical protein R10E8.6 [Caenorhabditis elegans] ref|NP_507572.1| R10E8.6 [Caenorhabditis elegans] 0.0
blast CAB07259 Hypothetical protein K10G4.4 [Caenorhabditis elegans] ref|NP_507378.1| K10G4.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.0E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178764_AT
caagtgaagcaaattctcatgccaaatgtacttcggagccacaaattccagttagtaaat
ttaggtttagccgtgagaaacgaatcggaaattttggagcttctcgaatgctttgacgct
ggaaaattgaaatttctgattttggaattcgctagaaaaaaggaagaggagactggaggg
acaatagaaataaatcgaatagcggagatggaccactggaggaatctggaggagctcgaa
gttattgactgtgtgatcaatgcggatccattgaactttaaccaattattcgaacatttc
aaaacactcaaagtttgcctgcaaaacttcaccgttgacaacttgcttttcatgaaacag
gcaacatcctcactgagtttacatttcatctgcgaaaactttgaactggagaacttgtat
gatcttattggacgtcctttacttgaaaccgagaatgcagtcaaatgtcgaaaatggttc
ttcaagttaattggctctatagaaaacactctgatattgataattcacactgaaaatggc
aaaatccatattcgaatgactagaattcctacaacagatgttcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTGAAGCAAATTCTCATGCCAA 607 183 1804 Antisense
CTCATGCCAAATGTACTTCGGAGCC 319 227 1819 Antisense
GCGGAGATGGACCACTGGAGGAATC 310 293 2005 Antisense
CAAAACTTCACCGTTGACAACTTGC 314 191 2125 Antisense
CACCGTTGACAACTTGCTTTTCATG 682 199 2133 Antisense
GAAACAGGCAACATCCTCACTGAGT 694 355 2157 Antisense
CACTGAGTTTACATTTCATCTGCGA 295 199 2174 Antisense
GTATGATCTTATTGGACGTCCTTTA 576 455 2220 Antisense
CGTCCTTTACTTGAAACCGAGAATG 19 1 2236 Antisense
GCAAAATCCATATTCGAATGACTAG 403 319 2342 Antisense
GAATTCCTACAACAGATGTTCCCCA 219 323 2366 Antisense
Sequence Source Affymetrix Proprietary Database