[Home] | [Total List]

[178763_at]

Description C55A1.2 /REP_DB=WormBase Gene ID /WP=CE08988 /TR=O17714 /GB=CAB04008.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 09      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 33.2
(-0.8)
P 		9
(-3)
A 		40.6
(-0.1)
A 		74.2
(3)
P 		65
B 3.4
(-3)
A 		21.5
(-0.8)
A 		36
(1)
A 		52.7
(3)
M 		49
C 26.6
(-0.2)
M 		54.4
(2.8)
P 		1.6
(-3)
A 		55.8
(3)
P 		54
avr 21.1
(-3) 		28.3
(-1.9) 		26.1
(-2.2) 		60.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 69
(3)
P 		4.9
(-3)
A 		18.6
(-1.7)
A 		32.2
(-0.4)
A 		18.7
(-1.7)
A 		13.5
(-2.2)
A 		64
B 29.9
(0.4)
A 		13
(-1.8)
A 		31.5
(0.6)
A 		50.3
(3)
A 		16.5
(-1.4)
A 		4.1
(-3)
A 		46
C 36.9
(0.6)
A 		34.2
(0.3)
M 		57.9
(3)
A 		20.8
(-1.2)
A 		4.8
(-3)
A 		27
(-0.5)
A 		53
avr 45.3
(3) 		17.4
(-2.2) 		36
(1.3) 		34.4
(1) 		13.3
(-3) 		14.9
(-2.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.1
(3)
P 		1.9
(-3)
A 		10.6
(2.1)
A 		10.9
(2.3)
P 		10
B 1.1
(-3)
A 		5.3
(-0.5)
A 		8.3
(1.3)
A 		11.2
(3)
M 		10
C 8.8
(0.3)
M 		15.7
(3)
P 		0.6
(-3)
A 		9.4
(0.5)
P 		15
avr 7.3
(-1.8) 		7.6
(-1.4) 		6.5
(-3) 		10.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 12.7
(3)
P 		1.7
(-3)
A 		4.1
(-1.7)
A 		8.2
(0.5)
A 		5.6
(-0.9)
A 		3.3
(-2.1)
A 		11
B 10.4
(1.5)
A 		4.3
(-1.6)
A 		7.7
(0.2)
A 		13.3
(3)
A 		6.7
(-0.4)
A 		1.5
(-3)
A 		12
C 13.7
(2.5)
A 		10.4
(1)
M 		14.7
(3)
A 		4.2
(-1.8)
A 		1.6
(-3)
A 		9
(0.4)
A 		13
avr 12.3
(3) 		5.5
(-2.3) 		8.8
(0.3) 		8.6
(0.1) 		4.6
(-3) 		4.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13713
Sequence Type Exemplar sequence
Representative Public ID C55A1.2 NCBI
Target Description C55A1.2 /REP_DB=WormBase Gene ID /WP=CE08988 /TR=O17714 /GB=CAB04008.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074485
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022810 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15628445:15628807:1 None
GENEFINDER00000022811 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15626939:15628099:1 None
SNAP00000022791 ENSEMBL cdna:SNAP chromosome:CEL140:V:15627736:15628099:1 None
SNAP00000022792 ENSEMBL cdna:SNAP chromosome:CEL140:V:15628445:15628807:1 None
C55A1.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15626939:15628099:1 gene:C55A1.2 None
NM_074485 NCBI Caenorhabditis elegans C55A1.11 (C55A1.11) mRNA, complete cds. None
C55A1.11 ENSEMBL cdna:known chromosome:CEL140:V:15628445:15628807:1 gene:C55A1.11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15626938-15628807(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55A1.2
C55A1.11
Entrez Gene 183823 Entrez gene
WormBase CE33044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T20249 hypothetical protein C55A1.2 - Caenorhabditis elegans 1.0E-105
blast CAD60414 Hypothetical protein C55A1.11 [Caenorhabditis elegans] ref|NP_506886.2| C55A1.11 [Caenorhabditis elegans] 2.0E-63
blast T20249 hypothetical protein C55A1.2 - Caenorhabditis elegans 2.0E-63
blast T20249 hypothetical protein C55A1.2 - Caenorhabditis elegans 3.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022811 4 7-29,39-61,167-189,204-226
Sequence
Target Sequence 
>C. ELEGANS:178763_AT
gagtcctgggcatacattgcttacgagttgactccacttggtagtgacattctaacattt
tcacctccaactctattgttgatgtatagccgaacgactcgttattactcattggaaatg
atgctttgtatgaaaagctacctaaaacatccaatgatcgcaaagaccaaaatcattcat
ctctttgcatttttctctagtttttgtaacaggaaaattatatttcaaacaaccaagctg
atgtctttgagaaaatcgatgcaggagctgatgaaagaggctgatgagattatccataag
cagaatgttatggatggtgtggcaaatggtagcgatccggaaccttcttgttcttctcta
gcaaagtggagactgccaccaattcctagtcctccagctaagcaagcatcgctctcgaaa
ttgacaagcctttcaagaacacacatggaccattctccagttaaagaagagatcaagtca
acaaaaggatccgaatacttgaatcctgaaccacccgcaaatttccaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCCTGGGCATACATTGCTTACG 340 401 754 Antisense
TACGAGTTGACTCCACTTGGTAGTG 635 645 775 Antisense
TGACATTCTAACATTTTCACCTCCA 628 571 798 Antisense
GAACGACTCGTTATTACTCATTGGA 125 333 845 Antisense
AAATCATTCATCTCTTTGCATTTTT 608 117 923 Antisense
AATGGTAGCGATCCGGAACCTTCTT 540 157 1078 Antisense
AGTGGAGACTGCCACCAATTCCTAG 14 59 1118 Antisense
GTCCTCCAGCTAAGCAAGCATCGCT 543 475 1142 Antisense
GAACACACATGGACCATTCTCCAGT 120 353 1190 Antisense
CGAATACTTGAATCCTGAACCACCC 355 253 1245 Antisense
TGAACCACCCGCAAATTTCCAAAAG 292 573 1260 Antisense
Sequence Source Affymetrix Proprietary Database