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[178761_at]

Description T02E1.6 /REP_DB=WormBase Gene ID /WP=CE13056 /TR=O02291 /GB=CAB04661.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 12.9
(-1.6)
A 		18.5
(-0.6)
A 		4.9
(-3)
A 		39.1
(3)
A 		34
B 29.8
(2.2)
A 		6.6
(-3)
A 		22.4
(0.6)
A 		33.2
(3)
A 		27
C 10.2
(-2.2)
A 		4.5
(-3)
A 		24.9
(-0.1)
A 		46.7
(3)
A 		42
avr 17.6
(-1.4) 		9.9
(-3) 		17.4
(-1.5) 		39.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 2.5
(-3)
A 		23.5
(-2.3)
A 		2.1
(-3)
A 		9.2
(-2.8)
A 		67
(-0.8)
P 		182.5
(3)
P 		180
B 6.2
(-3)
A 		17.7
(-2.5)
A 		31.1
(-1.9)
A 		38.4
(-1.6)
A 		93.4
(0.9)
P 		141.7
(3)
P 		136
C 6.4
(-2.8)
A 		5.3
(-2.8)
A 		1.6
(-3)
A 		33.6
(-1.5)
A 		105.8
(1.9)
P 		129.3
(3)
P 		128
avr 5
(-3) 		15.5
(-2.6) 		11.6
(-2.7) 		27.1
(-2.1) 		88.7
(0.4) 		151.2
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.7
(1.6)
A 		4
(0.7)
A 		1.3
(-3)
A 		5.7
(3)
A 		4
B 9.5
(3)
A 		1.6
(-3)
A 		5.2
(-0.3)
A 		7.1
(1.2)
A 		8
C 3.4
(-1.3)
A 		1.3
(-3)
A 		8.7
(3)
A 		7.9
(2.4)
A 		7
avr 5.9
(1.7) 		2.3
(-3) 		5.1
(0.7) 		6.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 0.5
(-3)
A 		8.3
(-1.9)
A 		0.4
(-3)
A 		2.3
(-2.7)
A 		20.2
(-0.3)
P 		44.4
(3)
P 		44
B 2.2
(-3)
A 		5.9
(-2.6)
A 		7.5
(-2.4)
A 		10.2
(-2.1)
A 		38
(1.2)
P 		52.8
(3)
P 		51
C 2.4
(-2.7)
A 		1.6
(-2.8)
A 		0.4
(-3)
A 		6.8
(-2.1)
A 		34.2
(1.7)
P 		43.3
(3)
P 		43
avr 1.7
(-3) 		5.3
(-2.5) 		2.8
(-2.9) 		6.4
(-2.4) 		30.8
(0.9) 		46.8
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1427
Sequence Type Exemplar sequence
Representative Public ID T02E1.6 NCBI
Target Description T02E1.6 /REP_DB=WormBase Gene ID /WP=CE13056 /TR=O02291 /GB=CAB04661.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059835 NCBI Caenorhabditis elegans T02E1.6 (T02E1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000000262 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8218567:8220493:1 11/11 None
SNAP00000000252 ENSEMBL cdna:SNAP chromosome:CEL140:I:8219062:8220493:1 11/11 None
T02E1.6 ENSEMBL cdna:known chromosome:CEL140:I:8219657:8220493:1 gene:T02E1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8219587-8220424(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02E1.6
Entrez Gene 187987 Entrez gene
SwissProt O02291 EMBL-EBI
WormBase CE38218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04661 Hypothetical protein T02E1.6 [Caenorhabditis elegans] ref|NP_492236.2| T02E1.6 [Caenorhabditis elegans] 1.0E-123
blast CAB04661 Hypothetical protein T02E1.6 [Caenorhabditis elegans] ref|NP_492236.2| T02E1.6 [Caenorhabditis elegans] 1.0E-118
blast CAE60534 Hypothetical protein CBG04161 [Caenorhabditis briggsae] 3.0E-80
blast CAE60534 Hypothetical protein CBG04161 [Caenorhabditis briggsae] 1.0E-76
blast CAB04661 Hypothetical protein T02E1.6 [Caenorhabditis elegans] ref|NP_492236.2| T02E1.6 [Caenorhabditis elegans] 2.0E-76
blast CAE60534 Hypothetical protein CBG04161 [Caenorhabditis briggsae] 2.0E-76
blast CAE60534 Hypothetical protein CBG04161 [Caenorhabditis briggsae] 3.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492236.2 4 112-134,139-161,188-210,216-238
T02E1.6 4 33-55,60-82,109-131,137-159
GENEFINDER00000000262 4 194-216,221-243,270-292,298-320
SNAP00000000252 4 152-174,179-201,228-250,256-278
Sequence
Target Sequence 
>C. ELEGANS:178761_AT
agaacactgtaggcgaggcgacaccgtttctcgccgagcaaaaacagattatgatgattc
gaggagaacacttgaagaagaaaccaatttacacattgttttttctctttttggaattgg
tgatagccatgatgattctcatcacgtggagcttcttcgttgagaacaacgagatgattc
caattattctctgctttgtcaatgttatcattcttatcatcgtcgtgcttatcctctttg
caattcaatttggaagattgaatgtggtggaggaggcactcaatgaggatattcgattta
gaattccctacgagtggaagtattggatttgtgtcatgcacattctccgtttcttcctca
tctgtgccaacattaccatcggagttttggacaatgattttgacggtggcgtgattgtct
tggtatctggaatgccggtgatgctgattctatcggctggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACACTGTAGGCGAGGCGACACC 444 73 17 Antisense
CACCGTTTCTCGCCGAGCAAAAACA 413 201 38 Antisense
GATTCTCATCACGTGGAGCTTCTTC 3 433 150 Antisense
TCCAATTATTCTCTGCTTTGTCAAT 551 587 195 Antisense
TCTTATCATCGTCGTGCTTATCCTC 659 615 228 Antisense
TTCGATTTAGAATTCCCTACGAGTG 686 693 308 Antisense
GATTTGTGTCATGCACATTCTCCGT 640 427 342 Antisense
TCTGTGCCAACATTACCATCGGAGT 92 609 377 Antisense
TTGACGGTGGCGTGATTGTCTTGGT 55 649 416 Antisense
GGTATCTGGAATGCCGGTGATGCTG 416 505 438 Antisense
GTGATGCTGATTCTATCGGCTGGAC 37 483 454 Antisense
Sequence Source Affymetrix Proprietary Database