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[178760_at]

Description Y6B3B.7 /REP_DB=WormBase Gene ID /WP=CE20181 /TR=Q9U1T2 /GB=CAB63412.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 132.3
(3)
P 		47
(-3)
A 		48.1
(-2.9)
A 		120.2
(2.1)
A 		85
B 141
(3)
P 		79.7
(-1.1)
A 		117
(1.4)
P 		50.7
(-3)
A 		90
C 101.4
(1.3)
M 		86.7
(0.3)
A 		42.7
(-3)
A 		123.7
(3)
A 		81
avr 124.9
(3) 		71.1
(-2.8) 		69.3
(-3) 		98.2
(0.1) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 97
(1.4)
P 		119.6
(3)
P 		91.8
(1)
A 		97.5
(1.4)
P 		77
(-0)
P 		35.2
(-3)
A 		84
B 129.1
(3)
P 		100.8
(0.7)
P 		96
(0.3)
A 		76.1
(-1.4)
P 		67.3
(-2.1)
P 		56.1
(-3)
A 		73
C 112.5
(3)
M 		112.4
(3)
P 		69.2
(-1.6)
A 		104.9
(2.2)
A 		70
(-1.5)
P 		55.7
(-3)
A 		57
avr 112.9
(3) 		110.9
(2.8) 		85.7
(0.4) 		92.8
(1.1) 		71.4
(-0.9) 		49
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 48.2
(3)
P 		10.2
(-3)
A 		12.6
(-2.6)
A 		17.6
(-1.8)
A 		38
B 45
(3)
P 		19.7
(-1.4)
A 		27.1
(-0.1)
P 		10.8
(-3)
A 		34
C 33.6
(3)
M 		24.9
(0.2)
A 		14.9
(-3)
A 		20.9
(-1.1)
A 		19
avr 42.3
(3) 		18.3
(-2.6) 		18.2
(-2.6) 		16.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 17.9
(-1.4)
P 		42.5
(3)
P 		20
(-1)
A 		24.7
(-0.2)
P 		23.2
(-0.4)
P 		8.6
(-3)
A 		34
B 44.9
(3)
P 		33.5
(0.2)
P 		23.3
(-2.2)
A 		20.2
(-3)
P 		27.3
(-1.3)
P 		20.9
(-2.8)
A 		25
C 41.7
(3)
M 		34.3
(1.2)
P 		17.6
(-3)
A 		21.1
(-2.1)
A 		22.7
(-1.7)
P 		18.7
(-2.7)
A 		24
avr 34.8
(2.4) 		36.8
(3) 		20.3
(-1.8) 		22
(-1.3) 		24.4
(-0.6) 		16.1
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178760_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1394
Sequence Type Exemplar sequence
Representative Public ID Y6B3B.7 NCBI
Target Description Y6B3B.7 /REP_DB=WormBase Gene ID /WP=CE20181 /TR=Q9U1T2 /GB=CAB63412.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061005 NCBI Caenorhabditis elegans Y6B3B.7 (Y6B3B.7) mRNA, complete cds. 11/11 None
GENEFINDER00000043759 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13754979:13756975:1 9/11 None
Y6B3B.7 ENSEMBL cdna:known chromosome:CEL140:I:13754979:13757317:1 gene:Y6B3B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043752 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13754909-13757248(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6B3B.7
Entrez Gene 189369 Entrez gene
SwissProt Q9U1T2 EMBL-EBI
WormBase CE20181 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63412 Hypothetical protein Y6B3B.7 [Caenorhabditis elegans] ref|NP_493406.1| Y6B3B.7 [Caenorhabditis elegans] 1.0E-74
blast CAB63412 Hypothetical protein Y6B3B.7 [Caenorhabditis elegans] ref|NP_493406.1| Y6B3B.7 [Caenorhabditis elegans] 2.0E-64
blast CAE68022 Hypothetical protein CBG13637 [Caenorhabditis briggsae] 3.0E-49
Sequence
Target Sequence 
>C. ELEGANS:178760_AT
gatctccagaagacgtggtagccggatagtgcgatttctggtatttttattgtgttttga
agcaaccatcgcgataacctgctacgactgtcactctgaccagggaacgtgtaatgatgg
agagtgcgagggagttgtgtgcatcaagatggagacggcgaataaggcggatggtgagaa
aaattacggaaaattggacaccacttatcgacgaacaattcacaaaacatgcggagacga
ggcggaggagatgtcatgtcagcagtcggcgttcggaagtaaatggatgagccgatgtgt
atgtgatactccgctttgtaacggggatcagcttcaaactgctttgtttcgttcaatgcg
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCCAGAAGACGTGGTAGCCGG 50 419 15 Antisense
GTAGCCGGATAGTGCGATTTCTGGT 457 457 32 Antisense
GTGTTTTGAAGCAACCATCGCGATA 47 487 66 Antisense
ATCGCGATAACCTGCTACGACTGTC 370 37 82 Antisense
ACGACTGTCACTCTGACCAGGGAAC 268 91 98 Antisense
ATTGGACACCACTTATCGACGAACA 356 3 207 Antisense
GAGGCGGAGGAGATGTCATGTCAGC 73 407 253 Antisense
TGTCAGCAGTCGGCGTTCGGAAGTA 363 555 271 Antisense
GATACTCCGCTTTGTAACGGGGATC 241 393 319 Antisense
GGGGATCAGCTTCAAACTGCTTTGT 187 499 337 Antisense
ACTGCTTTGTTTCGTTCAATGCGCA 143 99 352 Antisense
Sequence Source Affymetrix Proprietary Database