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[178759_at]

Description F59C6.6 /REP_DB=WormBase Gene ID /WP=CE11466 /TR=Q93832 /GB=CAB01877.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 96      4grp_total > 42      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 39
(-3)
A 		54.2
(-1.2)
A 		65.9
(0.1)
A 		90.4
(3)
P 		51
B 32.5
(-3)
A 		67.8
(3)
A 		45.7
(-0.8)
A 		33.6
(-2.8)
A 		35
C 49.4
(-0.7)
A 		78.1
(3)
A 		35.3
(-2.5)
A 		31
(-3)
A 		47
avr 40.3
(-3) 		66.7
(3) 		49
(-1) 		51.7
(-0.4) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 21.4
(-3)
A 		52.4
(-0.7)
A 		60
(-0.1)
P 		64.1
(0.2)
P 		101.8
(3)
P 		94.3
(2.4)
P 		80
B 36.9
(-3)
M 		46.4
(-2.1)
A 		41.1
(-2.6)
P 		63.3
(-0.6)
P 		78.1
(0.7)
P 		103.7
(3)
P 		67
C 62.2
(-1.4)
P 		67.3
(-0.9)
P 		47.3
(-3)
A 		92.7
(1.9)
P 		103.2
(3)
P 		93.3
(1.9)
P 		56
avr 40.2
(-3) 		55.4
(-1.4) 		49.5
(-2) 		73.4
(0.5) 		94.4
(2.7) 		97.1
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.2
(-0.3)
A 		11.8
(-3)
A 		17.2
(3)
A 		13.2
(-1.4)
P 		5
B 10.4
(-1)
A 		16.7
(3)
A 		10.6
(-0.9)
A 		7.2
(-3)
A 		10
C 16.4
(0.9)
A 		22.4
(3)
A 		12.3
(-0.5)
A 		5.2
(-3)
A 		17
avr 13.7
(0.7) 		17
(3) 		13.4
(0.5) 		8.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 3.9
(-3)
A 		18.7
(0.3)
A 		13.1
(-0.9)
P 		16.3
(-0.2)
P 		30.7
(3)
P 		23
(1.3)
P 		27
B 12.9
(-2.4)
M 		15.4
(-1.9)
A 		10
(-3)
P 		16.8
(-1.6)
P 		31.7
(1.5)
P 		38.7
(3)
P 		29
C 23
(0.1)
P 		20.5
(-0.6)
P 		12
(-3)
A 		18.6
(-1.1)
P 		33.4
(3)
P 		31.2
(2.4)
P 		21
avr 13.3
(-2.5) 		18.2
(-1.1) 		11.7
(-3) 		17.2
(-1.4) 		31.9
(3) 		31
(2.7) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1432
Sequence Type Exemplar sequence
Representative Public ID F59C6.6 NCBI
Target Description F59C6.6 /REP_DB=WormBase Gene ID /WP=CE11466 /TR=Q93832 /GB=CAB01877.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060349 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-4) (nlp-4) mRNA, complete cds. 11/11 None
F59C6.6 ENSEMBL cdna:known chromosome:CEL140:I:10524195:10525862:-1 gene:F59C6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029118 5/11 Cross Hyb Matching Probes None
GENEFINDER00000029132 5/11 Cross Hyb Matching Probes None
GENEFINDER00000029130 6/11 Cross Hyb Matching Probes None
SNAP00000029119 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10524153-10525793(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nlp-4
Ensembl F59C6.6
Entrez Gene 172932 Entrez gene
SwissProt Q93832 EMBL-EBI
WormBase CE11466 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16462 pyrophosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01877 Hypothetical protein F59C6.6 [Caenorhabditis elegans] ref|NP_492750.1| Neuropeptide-Like Protein family member (nlp-4) [Caenorhabditis elegans] 1.0E-105
blast CAE58957 Hypothetical protein CBG02225 [Caenorhabditis briggsae] 9.0E-31
Sequence
Target Sequence 
>C. ELEGANS:178759_AT
gattactccttatgtcgttatcattcacagatgctgggaatctaaagaagttccacatcg
ttgcgatcggaaaatcgtccaaccaatcccaccactcaatgtcactgttaactcgaagac
tcctgatgagaagaaagtgtacaactttggaaaagtcgatcttcgctttaagaatcctgc
cgaagttacttcgaaaatgagatcattaattctttttgttattcttcttgttgcattcgc
agccgctcgtccagtctctgaagaagtagatcgagttaagagagactatgatccaagaac
tgaagctccaagacgcttgcctgctgatgatgacgaggttgatggagaagatcgtgtgaa
aagagactacgatccaagaaccgatgctccaatccgtgttccagttgatccagaagccga
aggagaggatcgtgtgaagagagacttgtctttcagtccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTACTCCTTATGTCGTTATCATT 212 429 132 Antisense
AAAGAAGTTCCACATCGTTGCGATC 265 121 175 Antisense
TCGGAAAATCGTCCAACCAATCCCA 558 605 198 Antisense
CCACCACTCAATGTCACTGTTAACT 417 273 220 Antisense
ACTGTTAACTCGAAGACTCCTGATG 594 97 235 Antisense
GATCTTCGCTTTAAGAATCCTGCCG 556 417 289 Antisense
TATTCTTCTTGTTGCATTCGCAGCC 521 661 351 Antisense
CGCTCGTCCAGTCTCTGAAGAAGTA 341 255 375 Antisense
AACTGAAGCTCCAAGACGCTTGCCT 347 141 429 Antisense
GACTACGATCCAAGAACCGATGCTC 343 373 496 Antisense
GAGAGACTTGTCTTTCAGTCCAAAT 568 393 570 Antisense
Sequence Source Affymetrix Proprietary Database