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[178758_at]

Description R07E3.2 /REP_DB=WormBase Gene ID /WP=CE02296 /TR=Q21814 /GB=CAA89074.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 90.5
(-0.8)
A 		72.6
(-3)
A 		122.2
(3)
A 		102.7
(0.6)
A 		50
B 41.1
(-1.7)
A 		114
(2.1)
A 		131
(3)
M 		16.8
(-3)
A 		114
C 99.1
(-1)
P 		146.6
(3)
M 		121.4
(0.9)
M 		74.9
(-3)
A 		72
avr 76.9
(-1.8) 		111.1
(1.6) 		124.9
(3) 		64.8
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 71.6
(-2.4)
A 		67.9
(-3)
A 		105.5
(3)
M 		89.8
(0.5)
A 		104.4
(2.8)
P 		102.8
(2.6)
A 		38
B 119.8
(-0)
A 		127.3
(0.7)
M 		87.2
(-3)
P 		90.7
(-2.7)
A 		109.2
(-1)
M 		152.4
(3)
P 		65
C 88.6
(-1.8)
A 		133
(3)
A 		97.2
(-0.9)
P 		77.7
(-3)
M 		91.5
(-1.5)
P 		96.3
(-1)
M 		55
avr 93.3
(-1.6) 		109.4
(1.5) 		96.6
(-1) 		86.1
(-3) 		101.7
(0) 		117.2
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 32.9
(3)
A 		15.8
(-2.7)
A 		31.9
(2.7)
A 		15
(-3)
A 		18
B 13.1
(-0.9)
A 		28.1
(2.5)
A 		30.4
(3)
M 		3.6
(-3)
A 		27
C 32.8
(1.1)
P 		42.2
(3)
M 		42.3
(3)
M 		12.6
(-3)
A 		30
avr 26.3
(0.9) 		28.7
(1.5) 		34.9
(3) 		10.4
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.2
(-3)
A 		24.2
(0.6)
A 		23
(0.2)
M 		22.8
(0.1)
A 		31.5
(3)
P 		25
(0.9)
A 		18
B 41.7
(0.5)
A 		42.4
(0.6)
M 		21.2
(-3)
P 		24
(-2.5)
A 		44.4
(0.9)
M 		56.8
(3)
P 		36
C 32.9
(1.2)
A 		40.6
(3)
A 		24.7
(-0.8)
P 		15.6
(-3)
M 		29.6
(0.4)
P 		32.2
(1)
M 		25
avr 29.3
(-0) 		35.7
(2.2) 		23
(-2.2) 		20.8
(-3) 		35.2
(2) 		38
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16942
Sequence Type Exemplar sequence
Representative Public ID R07E3.2 NCBI
Target Description R07E3.2 /REP_DB=WormBase Gene ID /WP=CE02296 /TR=Q21814 /GB=CAA89074.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077334 NCBI Caenorhabditis elegans R07E3.2 (R07E3.2) mRNA, complete cds. 11/11 None
R07E3.2 ENSEMBL cdna:known chromosome:CEL140:X:10336092:10336998:1 gene:R07E3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043090 7/11 Cross Hyb Matching Probes None
GENEFINDER00000043093 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10336091-10336998(+) 81.62 100.0
Public Domain and Genome References
Gene Title
Ensembl R07E3.2
Entrez Gene 187676 Entrez gene
SwissProt Q21814 EMBL-EBI
WormBase CE02296 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA89074 Hypothetical protein R07E3.2 [Caenorhabditis elegans] ref|NP_509735.1| R07E3.2 [Caenorhabditis elegans] 3.0E-63
Sequence
Target Sequence 
>C. ELEGANS:178758_AT
ccgctaagaccgttcgtgagccggctcttctcaccgattatataagccgagcatttgata
agatgccatcatcaattcatctcattttcctattttcacaatgcgtcgttctgttctcat
tctctcaacttgcgctctcattgctctcggtcaagactggggaggaggtggtggatacgg
aggcggcggtgacatgggaggatatggtggtggaggatacggtggaggtggtgatatggg
aggaggatatggtggcggaggtgacatgggaggaggcggctatggaggtggcggagacat
gggaggaggatacggaggaggtggtgacggcggatatggtggctacggaggtggcggata
cggaggaggtggtgatatgggaggcggctacggaatgggaggaggaggcggtggagatgg
tggatacggaggtggtggctatggaggcaacatgggaggaggaaacatgggaggtggtgg
tggatacggatcctaccaaggaggaccacaacaaccaatgggaggacagcaaggaggtta
tggtggacaaccttacggaggtggcggacaaggaggatggccaccaatgccaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCTAAGACCGTTCGTGAGCCGGC 522 257 113 Antisense
CCGGCTCTTCTCACCGATTATATAA 603 265 133 Antisense
GCCATCATCAATTCATCTCATTTTC 325 281 177 Antisense
TTTCACAATGCGTCGTTCTGTTCTC 466 671 206 Antisense
TCTCATTGCTCTCGGTCAAGACTGG 257 611 248 Antisense
GAGGTGACATGGGAGGAGGCGGCTA 558 401 370 Antisense
GGAGGAGGTGGTGACGGCGGATATG 449 515 426 Antisense
TGGTGGCTACGGAGGTGGCGGATAC 350 553 449 Antisense
TGGTGATATGGGAGGCGGCTACGGA 602 551 482 Antisense
GGTGGACAACCTTACGGAGGTGGCG 61 487 654 Antisense
GGAGGATGGCCACCAATGCCAAACT 130 515 684 Antisense
Sequence Source Affymetrix Proprietary Database